Erigeron canadensis (horseweed): 122598096
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Entry
122598096 CDS
T07610
Name
(RefSeq) RNA-binding protein 39-like
KO
K13091
RNA-binding protein 23/39
Organism
ecad
Erigeron canadensis (horseweed)
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ecad03041
]
122598096
Spliceosome [BR:
ecad03041
]
Common components
Common spliceosomal components
General mRNP proteins
122598096
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_7
RRM_8
Motif
Other DBs
NCBI-GeneID:
122598096
NCBI-ProteinID:
XP_043626641
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All DBs
Position
1:7726092..7738058
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AA seq
627 aa
AA seq
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MDFDEYDYLEKMVENPEATNAEKTPNGGEVTGKNEDKERRQSSRHRSEKDSDDRRSKRAK
PGEELRDREKERGPSHHRSSPKDGDRSDRERQRSSRETREREKDKGRDREKDKDRGREEK
NGKGRDKDRERDRDKERDRGTDRERDRVRGRREHGREHEKEREDKEQEKEPERPHRSGSR
SERHRNEQDREKSRDREKSRDSEKSRDREKSREREKSRDRELKDREKERETREPDRESRR
YKDKKEGGAEPEVDPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRS
KGVGYIEFYDSMSVPMAIALSGQLLLGNPVMVKPSEAEKNLVQSTATAGAAGGTGAYAGG
ARKLYVGNLHYNMKEDQLRQVFESFGTVELVQLPTDETGNCKGFGFIQFARLEDARAAQS
LNGQLEIAGRMMKVSAITDQSGMQEMGVNPGDFDDDDGGGLSLNARSRALLMQKLDRSGT
TTSVVGSMGMPTTNGMGLPLPPPPPGAVLFPGANLPVPPVTVPSIESIGAPSECLLLKNM
FDSELEDEPDFDVDIKEDVQSECSNFGKLRHIHVEKNSAGFVYLRFENTQFAVAAQRALH
GRWFAGKMITATFMLPNDYAAKFPDSS
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atggattttgatgaatatgattacttggaaaaaatggtggaaaatccagaggcaacaaat
gcagagaaaacaccaaatggtggtgaagtaactggtaaaaatgaagataaagaacgaagg
cagagctctagacatagaagtgagaaggacagtgatgatcgtaggtcaaaacgtgcaaaa
ccgggtgaggagttgcgtgaccgtgagaaagaaaggggcccatcgcaccatcgttcgtct
ccaaaagatggggatagaagtgatagagaaagacaaaggagtagccgtgaaaccagagag
agggaaaaggacaagggaagggacagggaaaaagacaaggacaggggcagggaggagaag
aatggcaagggtagagataaagatagagaaagagatagagacaaagaaagagacagaggc
acggacagggagagggatcgtgtgagaggacggagggaacatggacgtgaacatgagaaa
gagagggaggataaagaacaagaaaaagaacctgagaggccacatcgtagtggtagcagg
tcagaaaggcatagaaatgaacaagacagggaaaagagtcgggatagggaaaagagtcgg
gatagtgaaaagagccgggacagagaaaagagtcgggaaagggagaagagtcgtgatagg
gagcttaaagatagagaaaaagaaagggaaactagagaacctgatcgagaaagcaggcgt
tataaagacaaaaaggaaggaggggcagaaccagaggtagatccagaacgagatcagcgc
actgtctttgcatatcagatatctctgaaggctgatgaaagagatgtttacgagttcttc
tcgagggctggcaaggttcgagatgtacgtcttattatggatcgtaactcgagacgctca
aagggggttgggtacatcgaattttatgattcaatgtctgtcccaatggcaattgcactg
tccggtcagcttctccttggtaacccggtgatggttaaaccatctgaagccgaaaagaat
cttgtgcaatccactgcaactgctggtgctgcaggtggtacaggtgcatatgcaggaggg
gcaagaaaattgtatgttggcaatctgcattacaatatgaaggaggatcagcttcgtcag
gttttcgaatcatttggtacagtagagctggtgcagttacctactgatgagactgggaat
tgtaaaggttttggttttattcagtttgctcggcttgaagatgcgagggctgcacagagt
ttgaatgggcagttggagattgcagggcgaatgatgaaggtgtccgcaattactgatcaa
tctggaatgcaagaaatgggtgttaatcctggtgattttgatgatgatgatgggggtggc
ttgtctttgaatgcacgttctcgagcacttctcatgcagaaattggaccgaagtggaacc
acaacaagtgttgttggatctatgggcatgccaaccaccaatggtatgggtttaccacta
ccaccgccaccacctggagctgttctttttcctggtgctaatcttcctgttccacctgtt
actgttccatccatagagagtattggtgcccctagcgaatgtttattgttgaaaaacatg
tttgattctgagttggaggatgagccagattttgatgtagatatcaaggaagatgttcaa
tcagaatgctcaaactttggaaagctaaggcatattcacgttgagaaaaacagtgccgga
tttgtgtatttgcgttttgagaacactcagtttgcagtagctgcccaacgtgcacttcat
gggagatggtttgctggaaagatgatcactgccacatttatgctgccaaatgattacgca
gccaaatttccagacagctcatag
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