Erigeron canadensis (horseweed): 122598322
Help
Entry
122598322 CDS
T07610
Name
(RefSeq) protein ESSENTIAL FOR POTEXVIRUS ACCUMULATION 1-like
KO
K18730
PERQ amino acid-rich with GYF domain-containing protein
Organism
ecad
Erigeron canadensis (horseweed)
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122598322
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
122598322
Surveillance factors
Other surveillance factors
122598322
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GYF
Motif
Other DBs
NCBI-GeneID:
122598322
NCBI-ProteinID:
XP_043626853
LinkDB
All DBs
Position
1:43033705..43041093
Genome browser
AA seq
1399 aa
AA seq
DB search
MADLPDDLIFSSKLTISKVEAAGGNDEDKMMNFADDSKDHLALDSSIPLSPQWLYAKPNE
NKLERAPSSLSLGTSADSNVKERRPDTTDDKKDWRKVATETESARRWREEERETGLLGRR
DRRKTDRRPDVGRETNDTRAPPPSDRWNDAGNRNAGQEARRDSKWSSRWGPDEKEKETRT
EKKADVEKEEGHGDTQTHSNNTRSISERDPDARDKWRPRHRMEANSTGPGSFRAAPGFGV
EKGRAEGLSTGFTIGRGRSGGSAARPLSAGSIENNDSVPGKPGLSAGMFLYPRGKLLDIY
RTQKLDPSLVDMSDKIMQVPPITQVTAVEPLAFLAPDKDEEAILGDIWTGKVNNSEASYN
SFSRDRSQENIADAGRDDDLPLAEELVDPNNWTHQKDCESALLSNAPKTNLTDGQDSSGN
VGRNDDASNLNITDASHVNHQLFDDVAYDMNAELPNDSNSLFANPSSEQYWKGNMQPIKN
SINKHLASSIPPEELSLFYCDPQGEIQGPFLGVDIISWFEQGFFGAELPVRVADAPDGTP
FEELGDVMPHLKATNSYTSSGAFEENLDADMLVPPAVSEMGISTDDPRWQLAGNNGLSTN
SYSEGQNVHDEEIVFPGRPGSSHDVMGNALRGSTSGNYANNYTIPTELTEPRPPSQNENK
MHPFGLLWSELEGSSLRKDQSSIPPFSGGIHQQLMNPIAGGADQFPHMDQEVNHFDLAEK
LRAQHIQQQLLQQHNLLSASHLNEPMFDQLPGRNLLNQQLTGQTGQDLDHFLALQLQQQQ
QQQQQQHQRQVQLQQQMLLKEQQSRQQMLLEQLVQNQMQDGRVRSRNDAVRSNNALDQIL
LKHQILSEMQQRSQHQQRHVDPSIEHLIQAKYGHQGHPDDILEMMVRAKHGQMSSLEHQM
LQRDQFHGRQLPMGMRQRMEMEEERQLGSDWFHRVNSAGPGPSDFYQQQQRPSPEDFSHL
ERNLSVQERVQLGLYDPNLLPYERSLSMPGGGPGVNLDVVNSLARAQSIDYQDSNARLLH
ANQVARFPSSVNSHQSSHSLGSNNFRPSHFDVMEGHNGQLQNEWMESRIQQLHINNERQK
REMESIRSSEDQSLWMSGGTSDDTSKRLLMELLHQKPTNQPTEPLDINSGLPFERRLPSF
DHSDQQVGLNQNHPFSVGSYGSSVGTPMDETIVGFKGNDESSFFGMNGSSQAAYTNSMVS
PPDIMKGAGAETQENITQPGGGLYMDRVGPTDSSSVEAKDRVTAISKRPENILLKRPPVA
RAASSHEGLSELASNPDIRGRNVPTMISPEGGRREAGGNIVNQAAESMTAGKDIRFRRTS
SLSDADVSETASFSDMLKSNAKKTDNQAAAAAALESGDGQGGRPGKKKGKKGRQIDPALL
GFKVTSNRIMMGEIQRIED
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
atggccgatctccctgacgatctaatcttctcttccaaactcactatttccaaagtggaa
gcagcaggaggaaatgatgaggataagatgatgaatttcgctgatgattctaaagatcat
ctagctctggacagcagcatccctttgtctcctcagtggctttatgctaaaccaaacgag
aacaagttggagcgtgcacctagttctctttctcttggtacttctgctgattccaatgtg
aaagagcgccgcccagatacaactgatgacaaaaaagattggaggaaggttgctactgaa
accgagagtgctcgtcgttggcgtgaagaagaaagagaaacaggcttacttggtagaaga
gaccgcaggaaaaccgaccgccgtcctgatgttggtagagagaccaatgatactagagct
ccacctccctctgacaggtggaatgatgctggtaaccgtaatgctgggcaagaggcccgg
cgcgatagcaaatggtcatctaggtggggcccagatgaaaaagaaaaggaaacgcgaacg
gagaagaaagcagatgtcgaaaaggaagaaggccatggagacactcagacacattcaaat
aacactagatcaatttcagagcgtgatccagatgctcgtgataaatggaggccacgccac
aggatggaggcaaattctactggaccaggtagctttcgggccgcacctggattcggggta
gagaaaggacgtgccgagggtttgagcacgggttttaccattggacgtggacggtctggt
ggaagtgctgccagaccgttgtctgccgggtccattgagaacaatgatagtgttcctggc
aagcctggtctttctgctggcatgtttctctatccaaggggaaagcttcttgatatatac
cgtacacagaagcttgacccgtctttagttgacatgtctgacaaaatcatgcaagtacct
cctataacacaagtaactgctgttgaaccacttgcttttcttgctcctgataaagatgaa
gaggctattcttggggatatatggaccgggaaagtcaataatagtgaggcctcgtacaat
tcattttcaagggacaggtcacaagagaatattgcagatgccggaagagatgatgatctt
cccttggcagaggaactggtagatcctaataattggacccaccaaaaagattgtgagagt
gccctgctatctaatgctcctaaaaccaacttgacagatggacaagactctagcggaaat
gtaggcagaaatgatgatgcttctaatcttaatattaccgatgcatctcacgtgaaccat
cagctgtttgatgatgtggcgtatgacatgaatgccgagcttccaaatgattcaaactcc
ctctttgccaatccatcctctgagcaatactggaagggaaatatgcagccgataaagaat
agtataaataagcatctcgccagcagtatcccaccggaagaactaagtttgttctactgt
gacccgcaaggggaaattcagggaccgtttcttggggttgacatcatttcgtggtttgag
caagggttttttggagccgaattacctgttcgtgtggcagatgcaccagatggaactcct
tttgaagaactaggagatgttatgccacacttaaaagctacaaatagctatacttccagt
ggtgcttttgaagagaatctggacgctgatatgttggttccgcctgccgtttctgaaatg
ggaatttcaacagatgatcctcggtggcagttggctggtaataatggtttatctacaaat
tcgtattccgagggtcaaaacgtccatgatgaagaaattgtgttcccgggaaggcctggt
agtagtcatgatgtaatggggaatgctttaagaggctcaacgtctggaaattacgcaaac
aactacacgattcctaccgagttaactgaacctcgtccaccaagtcaaaatgaaaataag
atgcacccgtttgggttgttgtggtctgagcttgaagggtctagtttaagaaaagatcag
tcatcaattccaccttttagtggtggtattcaccagcagcttatgaatcctattgctgga
ggggctgaccagtttccacatatggatcaagaggtcaatcactttgatctagcagagaaa
cttagggctcaacacatccaacagcagctgctccagcagcataatctgttgtctgcttct
cacttgaatgagcctatgttcgatcaacttccaggtcgaaatcttttaaaccaacagttg
acaggtcaaactggtcaagatcttgaccactttttggcacttcagctgcaacagcaacaa
cagcagcagcagcagcagcatcaaaggcaggttcaacttcagcagcaaatgctactcaag
gagcaacaatctaggcagcaaatgctgcttgaacaattggtacaaaatcagatgcaagat
ggacgtgtcaggtcacgcaatgatgccgtgagatccaataatgcgctggatcaaattctt
ctgaagcatcagattttaagcgaaatgcaacagcgttcacaacatcagcaaagacatgtt
gatccatcaatagagcatctgattcaagcaaaatatggtcatcaagggcacccggatgat
attttggagatgatggtgcgtgctaaacatggacagatgtcatctttagaacatcagatg
cttcaacgtgaccaatttcatgggaggcagttgcctatggggatgaggcagaggatggaa
atggaggaagaacgacaactgggttctgattggtttcaccgtgttaattcagctggacct
ggtccttcagatttctatcagcagcaacaaagaccatctcctgaagattttagtcatctt
gaacggaatctttcggtccaagaacgggttcagcttggtctttacgatccgaacttgcta
ccatatgagaggtcattgtcaatgccaggtggtggtcctggagtgaaccttgatgttgta
aattccttagctcgagctcaaagcatagattatcaagattcgaatgctcggctactccat
gctaatcaagtagcccgatttccttcaagtgtcaattctcatcaatctagccattcctta
ggctctaataattttcgtccttcacatttcgatgtgatggaagggcacaatggtcaatta
caaaatgagtggatggaatctaggatccagcagctgcatatcaataatgagaggcagaaa
agggaaatggagtctataagaagctcagaggaccaaagtctttggatgtctggtggaact
agtgatgacacttcgaaaagattgcttatggaattactacatcagaagccaaccaatcag
cctactgaaccattagatataaatagtggactaccatttgaaagaagactaccttctttc
gatcattcagaccaacaagtaggactgaaccagaatcacccattttctgttggatcttat
gggtctagtgtaggcacacctatggacgagacaatagttgggttcaaaggcaatgatgag
agctcgttctttggtatgaatggatcgtctcaggcagcgtatacaaactctatggtgtca
cctccagatatcatgaaaggtgcaggtgcagaaacacaagaaaatattactcagccgggt
ggtggtttatatatggacagggtgggaccaacagattcttcttcagtagaggctaaagat
cgggtgacggctatttccaagaggcctgaaaatattttgttgaaacgtccaccagttgca
cgtgcggcttcatcacatgaaggattatctgagctggcatcaaatccagatatcagagga
aggaatgtccctactatgatatctcctgaaggagggagacgggaagcagggggcaatata
gtaaatcaagccgctgagagcatgacagctggcaaggatattcgttttaggagaacgtca
tctcttagtgatgctgatgtgtcagagacggcatcttttagtgacatgctgaaaagcaat
gccaagaagacagataatcaggcagcagcagctgctgctttagaaagtggagatgggcaa
gggggtagacctggaaagaagaaaggaaagaaggggcggcaaattgacccagctttactt
ggatttaaggttactagcaaccgaataatgatgggggagattcaacgtatagaagattaa
DBGET
integrated database retrieval system
