Erigeron canadensis (horseweed): 122598352
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Entry
122598352 CDS
T07610
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122598352
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecad03021
]
122598352
03041 Spliceosome [BR:
ecad03041
]
122598352
03036 Chromosome and associated proteins [BR:
ecad03036
]
122598352
Transcription machinery [BR:
ecad03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
122598352
Spliceosome [BR:
ecad03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
122598352
Complex B
122598352
Complex C
U2 SnRNP specific factors
122598352
Chromosome and associated proteins [BR:
ecad03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
122598352
TFTC complex
122598352
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_EML_2
Beta-prop_BBS7
Motif
Other DBs
NCBI-GeneID:
122598352
NCBI-ProteinID:
XP_043626879
LinkDB
All DBs
Position
1:30492908..30498156
Genome browser
AA seq
1212 aa
AA seq
DB search
MYLYNLTLQQATGIICAINGSFSGGNKSQEIVVARGKVLELLRPDENGKIQSILSVDVFG
AIRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFNQVHKETFGKSGSRRIVPGQY
LAVDPKGRAVMIGACEKQKLVYVLNRDSAARLTISSPLEAHKSHTITYSIVGVDCGFDNP
IFAAIELDYSEADQDSTGQAASEAQKQLTFYELDLGLNHVSRKWSEQVDNGANMLVTVPG
GGDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSATMHKQKSMFFFLL
QTEYGDVFKVTLDHDNERVTELKIKYFDTIPVSSAMCVMKLGFLFAASEFGNHALYQFQA
IGADPDVESSSATLMETDEGFQPVFFKPRGLKNLVRIDQVESLMPILDMKVVNLFEEETP
QIFTLCGRGPRSSLRILRPGLAISEMAVSQLPGVPSAVWTVKRNVNDEFDAYIVVSFANA
TLVLSIGETVEEVNDSGFLDTTPSLAVSLVGDDSLMQVHPSGIRHIREDGRINEWRTPGK
RTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLMEIEKHEMSGDVACLDIAPVPEGRQRS
RFLAVGSYDNTIRILSLDPDDCMQVLSMQSVSSPPESLLFLEVQASVGGEDGADHPASLF
LNSGLQSGVLFRTVVDMITGQLSDARSRFLGLRAPKLFSILVRGRRAMLCLSSRPWLGYV
HQGHFLLTPLSYESLEYAASFSSDQCAEGVVAVAGDALRVFTIERLGETFNETAIPLRYT
PRKFVFHPKRKLLVTIESDQGAFPAELRESAKKECFEAAGQGENGKLEIENGGDDEDKDD
PLSDEQYGYPKAETDKWVSCIRVLDPKSAETTCLLELQDNEAAFSICTVNFHDKEYGTLL
AVGTAKGLQFWPKRSLTAGYIHIYRFVKDGKSLELLHKTQVDGVPLALCQFQGRLLAGIG
STLRLYDLGKKRLLRKCENKLFPNTINSIHTYRDRIYVGDIQESFHYCKYRRDENQLYVF
ADDSVPRWLTAAYHVDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNG
APNKVEEIVQFHVGDVVTCMQKASLIPGGVECVMYGTVMGSLGALLAFSSRDDVDFFNHL
EMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQYPTLPIDMQRKIAEELDRTPGEI
LKKLEEVRNKIV
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atgtatctctacaatctcactctccaacaagccaccggaatcatctgcgcaatcaacggc
agcttctccggcggcaacaaatcacaagaaatcgtcgtcgcacgtggcaaggtcctcgag
cttttacgtcccgacgaaaacggtaaaatccaatcaatactttcagttgatgtttttggt
gctattagatccttagctcaatttaggttaactggtgctcaaaaggattatattgttgtc
ggttcggattcgggtcggatcgttattttagaatataataaagaaaaaaatgtgtttaat
caagttcataaagaaactttcggaaaatccggtagtcggcggattgtacctggtcagtat
ttagctgtagatccgaaaggtagggcggttatgattggtgcttgtgagaaacagaaactt
gtttatgttttgaatagggatagtgcggctaggttaacgatatcgagtcctttagaagca
cataagtctcatacgataacgtattcgattgttggtgtggattgtggttttgataatccg
atatttgctgctattgagttggattatagtgaggcagatcaggatagtacagggcaggct
gcgagtgaggctcaaaagcagttgacgttttatgagttggatttaggacttaatcatgtt
tctaggaagtggtctgagcaggtggataatggggcgaatatgcttgtgacggttccaggt
ggtggtgatgggccgagtggggtgttggtttgtgcggagaattttgttatttataagaat
caggggcatccggatgttagggcggttattcctcgacgagcggatttgcctgctgaacgg
ggggttttgattgtttcggctactatgcataaacagaagtcaatgtttttctttttgttg
cagacggagtatggagatgtgtttaaggttacgcttgatcatgataatgagagggttaca
gagttgaagattaagtattttgatactatacctgtgtcgtctgctatgtgtgttatgaag
ttggggtttctgtttgcggcttctgagtttgggaatcacgcattgtatcagtttcaggct
attggtgctgaccctgatgtggagtcatcttcagctacgttgatggaaactgatgaaggg
ttccagccggtgtttttcaagcctagagggttgaagaatcttgtgagaattgaccaggtg
gagagcttgatgccaattttggacatgaaagttgtgaatttgtttgaggaagagacacct
cagatatttacactttgtgggcgtggccctcgttcttctcttaggatactgagaccgggg
cttgctatcagtgaaatggcagtatcacagcttccgggtgtccctagtgcggtttggact
gttaagaggaacgttaatgatgaatttgatgcttacattgttgtttcgtttgcaaatgca
acgctcgtgctttctattggcgagactgtggaagaagttaatgacagtgggtttcttgac
accacaccgtcacttgctgtttcattggttggtgatgattctcttatgcaagtacatcct
agtggtattagacatataagggaagatggtcgtattaatgaatggagaactcctggtaaa
agaactatcgttaaggttggatcgaatcgacttcaagtggttatcgcattgagtggagga
gagcttatatactttgaggtagatatgaccggacagttaatggaaatcgagaaacatgaa
atgtcaggtgacgtggcttgtttagatatagccccagttcctgaaggaaggcaaagatcg
cgttttctagctgttggctcttatgataatactatcaggatcttatctttggatcctgat
gactgtatgcaggttcttagcatgcaaagtgtatcctcacctcctgagtcacttcttttt
ctcgaggtccaggcttctgtaggtggggaggatggtgctgaccacccggccagtcttttt
ctgaactcgggtcttcaaagcggggttctatttaggaccgttgtggatatgattaccggc
caactttcggatgcacggtcacggtttttgggacttagagctcctaaactgttctccata
ctagtgagaggaagacgagccatgctttgtttgtcgagtagaccgtggcttggttatgtt
caccaaggacattttcttttgacccccctgtcttatgaatctcttgaatatgcagcctcg
ttttcatctgatcagtgtgctgaaggtgtggttgctgttgctggggatgctttaagagtt
ttcactatagaaagattaggggaaacatttaatgaaactgctatacctttgcgatacaca
ccaagaaagtttgtgttccatcctaaaaggaaacttttggtaacaatcgagagtgatcag
ggcgcgtttccagctgagctgcgtgaaagcgctaaaaaggagtgcttcgaggcagcagga
cagggggagaacgggaaattggagatagaaaatggtggcgatgatgaagacaaagatgac
ccgctttctgatgaacaatatggttacccaaaagctgagacggataaatgggtttcttgc
attcgggttcttgacccaaagtcagccgagacgacatgtctattggagcttcaagataat
gaggctgctttcagtatatgtactgtgaacttccatgacaaggaatatggaaccctttta
gctgtgggtacagcaaaaggtctccagttttggcctaaaagatccttgacagctggatat
attcatatttatcggtttgtaaaagatggaaaatcgcttgaacttttgcacaaaacccaa
gttgatggtgttcctcttgcattatgccagtttcaaggaagattgcttgctgggattgga
tctactcttaggctttatgatctgggaaaaaaaaggttgcttagaaagtgtgagaataag
ctgtttccgaatacaatcaattccatccatacataccgtgatcgaatttatgtgggagac
attcaagagtcatttcattattgcaagtatagaagggatgaaaaccaactgtatgtattt
gctgatgactctgttccaagatggcttacagcagcataccatgtagactttgacacgatg
gcaggagcggataagtttgggaacatatattttgtgcggttgccacaggatgtatcggat
gaaattgaagaagatccaacaggtgggaagattaagtgggagcaggggaagcttaatgga
gctccgaataaggttgaagagatcgtgcaatttcatgtaggtgatgtggtgacatgcatg
caaaaagcatctttaattcctggtggtgtggagtgtgttatgtatgggactgttatgggt
agtttaggggcgttgctggcatttagctcccgagatgatgtggatttctttaatcacttg
gagatgcacatgcgacaggaacatccaccattgtgtggaagagatcacatggcttataga
tctgcctattttcctgttaaggatgtgattgacggtgacctgtgtgaacagtaccctaca
ttgcctattgatatgcagcggaaaattgcagaggaattggataggactcctggagagatt
ctgaaaaagctggaagaagtcaggaacaagattgtctaa
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