Erigeron canadensis (horseweed): 122598667
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Entry
122598667 CDS
T07610
Name
(RefSeq) probable pectate lyase 5
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad00040
Pentose and glucuronate interconversions
ecad01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
122598667
Enzymes [BR:
ecad01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
122598667
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
122598667
NCBI-ProteinID:
XP_043627187
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Position
4:34155089..34156609
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AA seq
506 aa
AA seq
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MHRPNNTYILLFCLLTFFFLGIRATNINLTLPYQHPNPEAVVEEVQRRLNVSIHRRQLLL
DTAAGGNHCLTGNPIDDCWKCDPNWFNDRQRLAGCGIGFGRLAFGGKGGQYYTVTSSSDD
DPVNPIPGTLRHAALQTEPLWIVFASNMLIKLKHELLVNSYKTLDGRGVKVEITGGGCIT
VQNVTNVIIHNIRVYDCVPAGNADIRSSPTQVGRRGLSDGDAISIKGSTNIWVDHCSLAH
CTDGLIDATLGSTAITISNNYFTNHNKVMLMGHDDAYLADKGMQATFAFNRFGRGLVQRM
PRCRHGYFHVVNNDYTEWKIYAIGGSANPTIYSQGNRFVAPADPNAKQVTRRVDADEKVW
AGWNWRTDGDLMENGAFFVPSGGQHVINHMYASVNPKSANLVEQLTTNAGVIDVRNKPFG
GVPVTPPGGGGGVPVTPPGGSGVSVTPPGGDGVPVTPPRGCGGVNPNDFGMIFESGAVAR
LAAPTTIFLNWLILFVICSKVSKKRS
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgcatcgtccaaacaacacatacattctcctgttttgccttttgaccttcttcttcttg
ggcattcgggccactaatattaatctaacacttccttatcaacatcctaaccccgaggct
gttgttgaagaagtacaaaggagattaaatgtatcgatacatcgaagacaattattgttg
gacacagcagcaggaggcaatcattgtctcaccggaaacccaatagacgattgctggaag
tgcgatccaaactggttcaatgaccggcaacgtctggcaggctgcggcattgggtttggc
cggttggcattcggtggcaaaggcggtcaatattacacggtcacaagttcctcggatgac
gacccagtgaacccgattcctggcactctaagacacgcagccttacaaaccgaaccctta
tggattgtatttgcatcaaacatgctcatcaaactcaaacacgaactccttgtcaatagt
tataaaacgctcgatggccgtggggtgaaggttgagataaccggtggaggttgtatcacg
gttcagaacgtaacaaacgtgatcatccataatattcgtgtttatgattgtgtaccagct
gggaacgcagatatacgctcaagtccaacgcaggttggacgtcgagggttatctgatggt
gatgcgatttcgataaaagggtcaacaaatatatgggttgatcattgttcattggctcat
tgtacggatggtttgatagatgcaactttgggctcaactgctattactatttcaaataat
tattttactaatcataacaaagttatgcttatgggacatgatgacgcgtacttggcagat
aaaggaatgcaggctacgtttgcgtttaatcgttttgggagaggtctggtacaacgaatg
ccgcggtgtaggcatgggtattttcatgtggtaaacaatgattacactgaatggaagata
tatgcaattggtgggagtgcgaatccgactatctatagtcaaggtaatcggtttgttgca
ccggcagaccctaacgcaaagcaggtgacaaggcgagtagatgcagatgagaaggtttgg
gctggatggaattggaggacggatggagacttgatggaaaatggtgccttttttgtgcct
tctggcggtcaacacgtaattaaccacatgtatgcaagtgttaatcctaagtcagccaac
cttgttgaacaactcacgacgaatgccggtgtcatcgatgtgcggaacaagccgtttggt
ggtgttccagttacaccaccaggaggaggtggtggtgttccagttacaccacctggaggg
agcggtgtttcagttacaccaccaggaggagatggtgttccagttacaccaccaagagga
tgtggtggtgttaatcctaacgattttggaatgatatttgagagtggcgcagtcgcaaga
ttagctgcgcccaccaccatctttttgaattggctaattctttttgtaatttgttcgaag
gtgtcgaaaaagagatcataa
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