Erigeron canadensis (horseweed): 122598694
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Entry
122598694 CDS
T07610
Name
(RefSeq) ruBisCO large subunit-binding protein subunit beta, chloroplastic
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122598694
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122598694
03110 Chaperones and folding catalysts [BR:
ecad03110
]
122598694
03029 Mitochondrial biogenesis [BR:
ecad03029
]
122598694
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ecad04147
]
122598694
Enzymes [BR:
ecad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
122598694
Messenger RNA biogenesis [BR:
ecad03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
122598694
Chaperones and folding catalysts [BR:
ecad03110
]
Heat shock proteins
HSP60 / Chaperonin
122598694
Mitochondrial biogenesis [BR:
ecad03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
122598694
Exosome [BR:
ecad04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
122598694
Exosomal proteins of other body fluids (saliva and urine)
122598694
Exosomal proteins of breast cancer cells
122598694
Exosomal proteins of colorectal cancer cells
122598694
Exosomal proteins of bladder cancer cells
122598694
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-GeneID:
122598694
NCBI-ProteinID:
XP_043627205
LinkDB
All DBs
Position
4:43416224..43421478
Genome browser
AA seq
583 aa
AA seq
DB search
MASITPLSSFSSISSSRIGQRNQNVVLQKRSSLKVKAMAKELYLNKDGSAVKKLQAGVNK
LADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAASKTN
DLAGDGTTTSVVLAQGLINEGVKVVAAGANPIQITRGIEKTTKALVEELKRMSKDVEDSE
LADVAAVSAGNNIEVGSMIAEAMSKVGRQGVVTLEEGKSAENYMYVVEGMQFDRGYISPY
FVTDSEKMTVEYENCKLLLVDKKITNARDLVSVLEDAIKGGYPILIIAEDIEQEALATLV
VNKLRGSLKIAALKAPGFGERKSQYLDDIAVLTGGTVIREEIGLNLETAGSEVLGLAAKV
VLTKDTTTIVGDGTTQELVNKRVVQIRNLVEAAEQDYEKEKLNERIAKLSGGVAVIQVGA
QTETELKEKKLRVEDALNATKAAVAEGIVVGGGCTLLRLAAKVDSIKDTLDNDEQKVGAD
IVKRALCYPMKLIAKNAGVNGSVVIEKVLSSDNPKFGYNAATGKYEDLMAAGIIDPTKVV
RCCLEHASSVAKTFLTSDAVVVEIKEPEPMPAGNPMDNSGYGY
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atggcatctatcactcccttgtcttcgttttcttcaatatcttcgagccgaattgggcag
agaaatcagaatgtagttctgcagaagagaagttcgctcaaggttaaagcgatggccaaa
gagttgtatcttaacaaggatgggtctgccgttaagaagctgcaggctggtgttaacaag
cttgcggatttagttggagtgactcttggtccaaaagggcgtaatgtagtgcttgagagc
aagtacggttctcccaaaattgtaaatgacggtgtaaccgtggctaaagaggttgaattg
gaagatcctgttgagaacattggtgccaagttggtgagacaagcggcttcaaagacaaat
gatttggccggtgatgggactacaacttctgttgttctagcacaaggcttgattaacgag
ggtgttaaggtggtagctgctggtgctaacccgattcagataacaagaggtattgaaaaa
actaccaaagcactggttgaagagcttaaacgaatgtcaaaagatgttgaagacagtgag
ctagcagatgtggcagcagtaagtgcagggaacaacattgaagtgggaagtatgattgct
gaagcaatgagcaaagtcggaaggcaaggtgtggtgactcttgaagaaggaaaaagcgct
gaaaactacatgtatgttgtggaaggcatgcagtttgaccgtggttacatttctccatat
ttcgttaccgacagtgagaaaatgaccgttgagtatgaaaactgcaagttgcttttggtt
gataagaagataacaaatgcaagagatttagttagtgttttggaagatgccattaaggga
gggtacccgatattgattatagcagaggacattgagcaggaagctcttgctacccttgta
gtgaacaagcttcgaggatcactaaagatcgctgcacttaaagcacctggatttggtgaa
cgcaagagtcaatatcttgatgatatcgctgttcttactggagggaccgtcatcagagag
gagatcgggttaaaccttgagactgccgggagtgaggttttaggacttgctgctaaggtg
gtcttgaccaaggatacaacaactattgttggtgacggcaccacccaggagttggtcaat
aaacgagttgtccagattagaaaccttgttgaggcagcagaacaggactatgaaaaggaa
aagttgaatgaaagaattgccaaattatccgggggtgtcgctgttatccaggttggggca
caaacagaaacagaacttaaagaaaagaaattgagagtagaggatgctttaaatgcaaca
aaggcggctgttgcggaaggcattgtagtagggggtgggtgcactctattgcgacttgct
gctaaggttgacagtatcaaagacacccttgacaatgatgaacagaaggttggagcagat
attgttaagagggcactttgctaccccatgaagctgattgcaaagaatgctggtgttaat
ggaagcgtggtgattgagaaggtcctatcaagtgacaatcccaagtttggttacaatgct
gcaactgggaaatatgaggatttgatggctgctggtattattgatcccacaaaggtggtg
agatgctgcttggagcatgcatcatcagttgcaaagaccttcctgacatcagatgccgtg
gttgtggagatcaaggagcctgaacccatgcctgctgggaaccccatggacaactcaggt
tatggttactga
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