Erigeron canadensis (horseweed): 122598933
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Entry
122598933 CDS
T07610
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122598933
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122598933
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122598933
mRNA degradation factors
5'-3' decay
Decapping complex
122598933
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
WDR55
Beta-prop_EML_2
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
122598933
NCBI-ProteinID:
XP_043627337
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All DBs
Position
5:33125366..33133817
Genome browser
AA seq
1334 aa
AA seq
DB search
MASPNNNTNQPPPPSFDVQRLFMNPSSSPPPISSSPNNINSTPTFQNPNPNNPNLPYPPP
SSAASYPPPTVTGTAGNPYPIYHPQFYPPSPQFENPNYPNHNPNSNHLPVTNLHHQRSVP
YPTPPLQPPSPRSNPNHGARLMALLSAPQTSTIDANTPGQPGVPIVQGPTNPMLMAPALH
SGGSGPLRMASSKLPKGRHLSGEKVVYDIDVRLPGEVQPQLEVTPITKYGSDPGLVVGRQ
IAVNKSYICYGLKLGAIRVLNINTALRSLLKGLAQRVTDMAFFAEDVHLLASASIDGRVY
VWKITEGTDEEDKPQITGKIVIALQIVGEGESVHPRVCWHCHKQEVLVVGIGKRVLRIDT
TKVGRGEAYSAEEPLKCPVDKLINGVQFVGSHDGEVTDLSMCQWMTTRLVSASVDGTIKI
WEDRKSSPIAVLRPHDGLPVNSVTFLTAPHRPDHIILITGGPLNREVKIWASDSEEGWLL
PSDADSWHCLQTLELKSSSESRVEDAFFNQVVALSQAGLLLLANAKKNAIYVVHLEYGPN
PESTQMDYVAEFTVTMPILSFTGTSDILPHGEQIVQVYCVQTQAIQQYALDMSQCLPPPI
DSITYDRQDSTVSRDAPSTEGLIVSEPSRSKVETSLDVSVPPSDVVSVLRQPSSSPLAES
SVESPPVALSPTLSRKLSDLKSPTGGHESSEPKVMEYSVDRQVDTSLAADSVTDESKVLR
EDGPKFKHPTHLVTPAELMATSSSEINHVSEVKNDTDSILHEVTSNTDLQNVELEVKVVG
ETGKIQNVETVLQSEVHGFASQASDFGSRVISGETFIVNEPKQLDGLDQTLGGQDDAQDA
KVDVSGQVEPATAVTADSPAPTSIKGRKHKGKNAQGSNQSSPSPSVFNSTDSSIEPVGGS
SVPSAESILSQLHSMQEVINQVLINQKEIQKQIPGMVAVPVTKEGKRVEVAIGKTMEKTY
KANSDALWVRTQEEFAKQEKANRDRHQQVSGLVTNGYKDLLAAWEKMLKKETSAIVPAVV
RSVTPVIEKTVSSAISEAFQRGVADKSVNQLEKSVNSKLEASVARQIQTQFQTSGKQALQ
EALRSSMEASIVPAFEMSCKAMFDQVDAAFQKGMIEHTSAAQQQVESAHSPLAIALRDAI
NSASSMTQTLSGELADGQRKLVALALSGANSESLNPLMAQISNGPIGSFHEIEAPLDPTK
ELSRLVYEHKYGDAFTAALQRSDVGIVSWLCSQVDLQGLLTRNPVPLSQGVLLSLLQQLA
CDIRNDTGKKLQWMMDVVVAIKPSDSMISMHVGPIYKQVYSILDHQINIPNTSVSELSSM
RILMQLINSTLRTL
NT seq
4005 nt
NT seq
+upstream
nt +downstream
nt
atggcttcccctaataataacactaatcaaccaccaccaccatcatttgatgttcaaaga
ctcttcatgaatccatcctcttctccacccccaatttcatcaagccctaataatatcaat
tccactcctacttttcaaaaccctaaccctaataatcccaatctgccatacccaccaccg
tcttccgccgcctcttacccaccgcccactgttaccggcaccgccggtaacccttaccca
atttaccaccctcagttttaccccccatctcctcaatttgaaaaccctaattacccgaat
cataacccgaatagtaaccacttgcctgttactaacttacaccatcaaagatctgttcct
tatcctacaccacctctccagccacctagtcctaggtcaaacccgaaccatggtgctcgt
ttaatggcgttgctaagcgcgccacaaacgagcactattgatgctaatactccgggtcaa
cccggtgttccgatagtgcaagggcctaccaaccctatgttgatggcccctgcattgcat
tcgggtggttctggcccgttacgaatggctagtagtaagttgcctaaaggacgacattta
agcggtgaaaaggttgtttatgatatagatgttaggttgcctggtgaagtgcagcctcaa
cttgaggttactcctattactaagtatgggtcggatcctggacttgttgtcggtaggcag
attgcggttaataagagttatatttgttatgggttgaaacttggtgccattcgagttctt
aatattaatactgctttgagatcattgcttaaaggtttagctcagagggttacagacatg
gcgttctttgccgaggatgttcatcttttagctagtgcaagcatagatggacgagtttat
gtgtggaagatcacagaaggcacagatgaggaggataagcctcagattacagggaagata
gttatcgcacttcagatcgtaggcgaaggagaatctgttcatccccgagtttgttggcac
tgccataaacaagaagtcctcgttgttggaattggaaaacgtgttttgagaattgatact
acaaaagttgggagaggcgaagcatattctgcagaggaacctctcaagtgtcctgttgac
aagttaattaatggagttcagtttgttggtagtcatgatggggaagtgacagatctatca
atgtgccaatggatgactacccgtttggtttctgcctcggtagatggaacgataaaaatt
tgggaagaccggaagtcctcaccgattgcagtgttaaggccacatgacggtttgcctgtc
aactcggttacatttttgactgctcctcatcgccctgatcacatcattcttataactggg
ggtcctttaaatcgtgaagtgaaaatatgggcttctgatagtgaagaaggatggttactt
ccaagtgatgccgattcatggcactgtttacagacattggaacttaaaagctcttctgaa
tctcgggtagaagatgcattttttaatcaagtggttgcgttatctcaagcaggtcttctc
ttactagccaacgcaaagaaaaatgccatttatgttgtacatttggaatacggtcccaat
ccagaatccacccaaatggattatgttgcagagttcacagtcaccatgcccatacttagt
tttactggcactagtgatatattaccacatggagagcaaattgttcaggtttactgtgtc
cagacacaggccattcaacaatatgctctagacatgtcccagtgcttaccacctccaatt
gatagcatcacttacgatagacaagattcaactgtttcacgtgatgcaccaagtactgaa
ggtttgattgtttcagaaccttctagaagcaaggtagaaacatctttggatgtctcggta
ccaccttctgatgttgtttctgttttgagacaaccatcaagttctcctttggctgaatct
tctgttgaatctcccccggttgcattaagtccaacattgtcccggaaactttctgatctg
aaaagtccaacaggcggccatgaatctagtgagccaaaagttatggaatactcagttgac
aggcaagtggacacgtcgttggctgcagattctgtaactgatgaaagcaaagtgttgaga
gaggatggtccaaagtttaagcatccaactcatttggtcactcctgctgaattgatggct
acatcatcctctgaaataaatcacgtttctgaggtaaagaatgacaccgattcaattcta
catgaggtgacttcaaatactgatttgcaaaatgttgagttggaggttaaggttgttggt
gaaactggaaaaattcaaaatgttgaaaccgttttgcaaagtgaggttcatggttttgct
tcacaggcatctgattttggaagccgtgtcatatctggggaaacttttattgtaaacgag
ccaaagcaacttgatggattagaccaaactttaggtggtcaagatgatgctcaagatgcg
aaagttgatgtatcaggacaggttgagccagcgacagctgtaacagccgactccccggca
ccgacatcaatcaaagggagaaaacataagggaaagaatgctcaagggtcaaaccagtca
tctccctccccaagtgtttttaattcaactgattcttctattgagccagtaggcggttca
agtgttccatctgctgaatccatactatcacaacttcattctatgcaagaagtaattaac
caggtcttgatcaatcaaaaggaaattcaaaagcagattccaggaatggtagcggtacct
gttacaaaagaaggcaaaagggtcgaggtagccataggaaaaaccatggagaaaacatac
aaagctaattctgatgctctctgggttcggactcaagaagaattcgcaaagcaggaaaag
gcaaaccgagatcggcatcaacaggtttcgggtttggttacaaatgggtacaaggacttg
cttgcagcttgggagaaaatgttgaagaaggaaacatctgcaatcgtgccagctgtggtg
cgatcagttactccagttattgagaaaactgtgtcttcagcaatttcagaggctttccag
agaggtgttgctgacaagtctgtaaaccaattggagaaatcagttaattctaagcttgaa
gctagtgttgctaggcaaattcaaacacaatttcaaacttctggcaaacaagcattgcag
gaagcactgaggtctagtatggaggcgtctattgttcctgcctttgagatgtcttgcaag
gccatgtttgatcaagttgatgctgcatttcaaaagggaatgattgagcatacaagcgca
gctcagcagcaagttgagtctgcacattctcctttggcgattgctttgagggatgccatc
aattcagcgtcgtccatgactcaaactttgagcggggaattagctgatggtcaaagaaag
ctggtagctcttgcactttcaggagcaaactcggaatcattaaacccgttgatggcccaa
ataagcaatggacctataggcagtttccatgagattgaggcaccattggatccaacgaaa
gagctatctagattggtatatgagcacaaatatggggacgctttcacagctgccctgcaa
cgaagtgatgttgggattgtgtcctggttatgctcccaggttgacctgcagggcttatta
actcgcaatccggtgcctctgagccaaggagtactgctatcgttactgcagcagctggct
tgtgatattcgaaacgacacaggaaagaaactccaatggatgatggatgtggtggtggcc
atcaagccatcagacagcatgatatcaatgcatgttggcccaatctacaagcaagtctac
tctatactagaccatcaaataaacattcccaacacatcagtatccgagctttcaagcatg
cggattttaatgcaactcatcaactccacactcaggaccctctaa
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