Erigeron canadensis (horseweed): 122599223
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Entry
122599223 CDS
T07610
Name
(RefSeq) WD-40 repeat-containing protein MSI1-like isoform X1
KO
K10752
histone-binding protein RBBP4
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03082
ATP-dependent chromatin remodeling
ecad03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122599223
03083 Polycomb repressive complex
122599223
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ecad03036
]
122599223
Chromosome and associated proteins [BR:
ecad03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
122599223
Histone modification proteins
HAT complexes
HATB complex
122599223
HDAC complexes
Sin3A-HDAC complex
122599223
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
122599223
PRC2.2
122599223
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
122599223
Heterochromatin formation proteins
Other heterochromatin formation proteins
122599223
Chromatin remodeling factors
NuRD complex
122599223
NuRF complex
122599223
NuRF complex (fruit fly)
122599223
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
CAF1C_H4-bd
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
WD40_Prp19
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_EML_2
WDR55
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
WD40_RFWD3
Beta-prop_EML
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
MIOS_WD40
eIF2A
Beta-prop_HPS5
Beta-prop_RIG_1st
Beta-prop_WDR19_1st
NBCH_WD40
Beta-prop_NUP159_NUP214
WD40_MABP1-WDR62_1st
Nbas_N
Motif
Other DBs
NCBI-GeneID:
122599223
NCBI-ProteinID:
XP_043627625
LinkDB
All DBs
Position
5:21624658..21635777
Genome browser
AA seq
425 aa
AA seq
DB search
MGKNEDDVRRQVEERVINEEYKIWKKNTPFLYDLVVTHALEWPSLTVEWLPDREEPAGKD
YSVQKLILGTHTSENEPNYLMIAQVQLPVDDAENDARSYDDHNNDVGGFGCNNGKVQIIQ
QINHEGEVNRARYMPQNPFIIATKTINAEVYIFDYSKHPSKPPLDGECNPDLRLRGHNTE
GYGLSWSKFKQGHLLSGSDDAQICLWDIQATPKNKVLEAKQIYKIHEGVVEDVAWHSRHE
QLFGSVGDDQYLHIWDTRSPSTTKPMQSVIAHRSEVNCLAFNPLNEWVLATGSTDKTVKL
FDLRKFTTAVHTFDRHQEEVFQVGWSPNNETILASCCLSRRLMVWDLSRIDMEQTPEEAK
DGPPELLFIHGGHTSKVSDFSWNPCEDWVIASVASDNILQIWQMAENIYYDEDDVPADQL
NNIDT
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaaaatgaagacgatgttcgaagacaagtcgaagaacgagtgatcaacgaagaa
tacaaaatctggaagaaaaacacaccctttttatacgatctggtcgtcactcacgccctc
gaatggccttccttgaccgtcgaatggcttcccgatcgagaggagccggccggaaaagac
tactcggtccagaagctgattcttgggacccacacttcagaaaatgagccaaattattta
atgatagctcaagttcaattgccggttgatgatgctgaaaatgatgctcgctcttatgat
gatcacaacaatgatgttggtgggttcggctgcaataatggcaaggttcaaataattcag
caaataaatcatgagggggaggtgaacagagctcgttatatgcctcaaaacccattcatt
atagccaccaagacaattaacgcagaagtttatatctttgattatagcaagcacccatct
aagcctcctcttgatggagaatgtaatcctgatttaagattgaggggtcacaacactgaa
ggatatggtttatcgtggagtaaattcaagcaaggtcatttgctgagtggttctgatgat
gcccaaatttgtttgtgggacattcaagcaacgccaaaaaacaaggtcttggaagctaag
cagatatacaagattcatgaaggcgttgttgaagacgtggcttggcattctaggcatgaa
cagctatttggctcggttggggatgaccaatacttgcacatatgggatacacgatctcca
tcgactaccaagcctatgcagagtgtaatagctcatcgaagcgaggttaattgcttagca
ttcaatcctcttaatgagtgggttttggcgactgggtcaacagacaagactgtgaagctt
tttgatttaagaaagttcacgactgctgttcatacgtttgatcgtcaccaggaggaggtg
tttcaggttggatggagtccaaataatgagacaattttagcatcttgttgtctttccagg
agactcatggtatgggatctgagtaggatcgacatggagcaaaccccagaggaagcaaaa
gatgggccgccagagttgctatttattcatggtggacatactagtaaagtttctgatttc
tcgtggaatccatgcgaagattgggtcattgctagcgtcgcttcagataacatcctccaa
atatggcagatggctgaaaatatctactatgatgaagatgatgtgcctgccgatcaactc
aataatatagatacatag
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