Erigeron canadensis (horseweed): 122599249
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Entry
122599249 CDS
T07610
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122599249
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122599249
03012 Translation factors [BR:
ecad03012
]
122599249
Enzymes [BR:
ecad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122599249
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
122599249
Translation factors [BR:
ecad03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
122599249
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
AAA_19
nSTAND3
ATPase
Dicer_dimer
PhoH
NACHT
TsaE
Motif
Other DBs
NCBI-GeneID:
122599249
NCBI-ProteinID:
XP_043627668
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All DBs
Position
1:40355907..40366493
Genome browser
AA seq
1183 aa
AA seq
DB search
MKDLQRPSSSSSYGSVYVPPHHRLRSVITTSAFSTDTTPAVVNNTNGNSVISSYHHSNGS
NNSYNDNSNGNGNSILANPNSFHQQQSKVQVNGNGSFQVSDRGFEFSFDPGATTSDIDSW
KWRLTTLLQSKDKQELVSREKKDRRIYEGISALATKMGLHSHLYTKVLVVSKVPLPNYRF
DLDDKRPQREVSLPPGLKSRVDVHLRDYLSYKASCINSSQDDLFSRISSNGDAVTDEGLF
DQPELPFQCQLAIGKVLQQRSIQLHTQQQEWQDSSDGWRMLQFRKSLPAYKEKEAIVNAI
LKHQVVIISGETGCGKTTQVPQFILESEIESIRGATCSIICTQPRRISAMSVSERIATER
GEKLGETVGYKVRLEGIKGRDTRLLFCTTGYLLRRLLVDRDLKGVTHVIVDEIHERGMNE
DFLLIVLKELLPRRPELRVILMSATLDAQLFSSYFGGVPLVQIPGFMHPVRTYYLEDVLE
KSGYRLTAENQIDDYGQDRTWKSNKQFIRKRKSQIASAVEEALGTAEFKDYSQQTRDSMS
CWNPDCIGFNLIEFLLCNICQNEKPGAVLVFLTGWDDISSLRDKLQAHYLLGDTSQVLLL
ACHGSMASTEQRLIFEKPEGGVRKIVLATNIAETSITIDDVVFVIDCGKAKETSYDALNN
TPCLLPSWISKVSAKQRRGRAGRVQPGECYHLYPRCVYDAFADYQLPEILRTPLQSLCLQ
IKSLKLGSISEFLSKALQSPELLAVQNAIEYLKIIGALDESENLTVLGRYLTMLPMEPKL
GKMIILGAVLNCLDPILTIVAGLSVRDPFLAPLDKKDLAEAAKAQFSRDFSDHLALVRAF
EGWKAAEYALTGYEYCWKNFLSAQSMKAIDSLRREFQSLLKDTGLIDSNMISYNTWSYDE
NLLRAVICYGLYPGICSVVHNEKSFSLKTMEDGPVHLHSNSVNARDSKIPYPWLVFNEKI
KVNSIFLRDSTAVSDSVLLLFGGSILKGDMDGHLKMMGGYLEFFMEPAIAGMYQSLRREL
DELFQCKLLNPRMDLHTHHELISAVRLLLPGDKCHGSFVFNRQVLYNNSIPYIGSAPPPP
PVVSRVESGPGGDNSKGQLQTLLTRAGHSIPSYRTTQLANNQFRSVCEFNGMQFMGRPCQ
TKKQAEKDAAAEALDRLMSNKQAGHDFIGNTSTMLKKSKKNPD
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacttacagcgtccgtcgtcgtcttcatcgtacggttccgtctacgttccgccg
catcaccgccttcgctccgtcatcactacatctgccttttccaccgatactacccctgcc
gttgttaacaatactaacggaaattctgttattagttcttatcatcatagtaatggtagt
aacaatagttataacgataacagtaatggtaatggtaatagtattttagcaaaccctaat
tcctttcaccagcaacagagtaaggtgcaggttaatggaaacggctcgtttcaagtatcc
gatcgaggtttcgagttctcatttgatcccggtgctaccacatctgatatagattcttgg
aagtggagactaacaacactactgcaaagcaaggataaacaagagctggtttcaagggaa
aaaaaagacagacgtatttatgaaggaatttcagccttggcaactaaaatgggtttgcat
agccatttgtataccaaagtgcttgttgttagcaaggttccgttgccaaactatcgtttt
gatttagatgataaacggccccagagggaggtgtccttgcctccgggtttgaaaagtaga
gttgatgtgcatctaagggattacctatcttataaggctagttgtattaacagttctcaa
gatgatttgttctcaagaataagtagcaatggagatgctgttactgatgaaggactcttt
gaccaaccagagctgccttttcaatgccagttggcgatagggaaagtccttcagcaaagg
agtattcaactgcatactcaacaacaagaatggcaggactcttcagatggttggaggatg
ctgcaatttcgtaaaagccttcccgcttacaaagaaaaagaggcaatagtgaatgccatt
ttaaagcatcaggttgtaatcatctcaggtgaaactggttgtgggaagacaacacaggtt
cctcagtttattttagaatcagagattgaatctattcgtggggccacatgtagtatcatt
tgcactcagcctcgacgcatatctgctatgtctgtttcagaaagaattgccaccgagaga
ggggagaagttgggtgaaactgttggatataaagttcgtttagaaggtataaaaggaaga
gatacccgcttgctattctgtaccaccggatatttgttgagaagattactggttgatagg
gacttaaagggtgttactcatgttattgtagacgagattcacgagcgtggcatgaatgaa
gattttcttcttattgtcctcaaagaactacttcctcgtcgcccggaactaagggtcatt
ttgatgagtgccaccctggatgcacaattattttcatcctactttggtggcgttccgttg
gtccaaattccgggttttatgcatccggtgcgtacctattatcttgaagatgtgttggag
aaatctgggtacagattaacagcagaaaatcagattgatgattatggccaggatagaaca
tggaaatcaaataaacagtttataagaaagagaaaaagccaaattgcctcagctgttgag
gaagcgcttggaactgctgaattcaaggattacagtcaacaaacaagggattcaatgtcc
tgttggaatcctgattgcataggttttaacctcatagaattcttactgtgcaatatatgt
cagaatgaaaagcccggtgctgtgttagtatttctgactgggtgggatgacataagttct
ctcagagacaaactacaagcacattacctcctgggagatacgagtcaagttttgttgcta
gcatgccatggttctatggccagcacagagcagaggttgatatttgaaaagccagaaggt
ggggtgaggaaaatagttttggctacaaatatcgctgaaacaagtattacaatagatgat
gtggtatttgttatcgactgtggaaaagccaaagagacatcgtatgatgctcttaacaat
acaccttgtctgcttccttcctggatatccaaggtttctgctaaacaaaggcgagggcgt
gcaggtcgtgttcagcctggagagtgttatcatctatatcctagatgcgtctatgatgct
tttgcagattatcaattgccagaaatactaaggactcctctgcagtcactttgtcttcaa
atcaaaagtttaaaactaggaagtatttctgaattcttatccaaagctttacagtcccct
gagttactagcggttcaaaatgccatcgaatatctcaagattattggtgctttagatgag
agtgaaaatctgactgtattaggtcgttatctgacaatgcttcctatggagccgaaactt
gggaaaatgattatactcggcgcagttcttaattgcctagaccctatacttactattgtt
gctggtcttagtgtcagagatccatttttggcacctctagacaagaaggacttggcagag
gcagccaaagcacagttttctcgtgattttagtgaccatcttgctcttgtgagggcattt
gagggttggaaagcagctgagtatgcacttactggatacgagtactgctggaaaaatttc
ctctctgcgcaatcaatgaaagctattgattctctgcgtagggaatttcagtcgttgcta
aaagatactggtcttattgacagcaatatgatcagttacaacacttggagctatgatgaa
aatctcctacgggcagttatatgttatggcttgtatccaggaatttgctctgtcgtgcac
aatgaaaagtcgttttcactgaaaacaatggaggatggtccagtgcatctacactctaac
tcggttaatgcacgtgattccaaaattccttacccttggctagtcttcaatgaaaagatc
aaagtgaactccatttttcttcgagattcaacagctgtgtctgattcagttctactttta
tttggtggaagcattttgaaaggcgatatggatggccacttgaaaatgatgggaggatac
ttggagttctttatggaacctgcgatagcgggaatgtatcaaagcttaagacgagagctt
gatgagttatttcagtgcaaactattgaatcccagaatggacctgcacacgcaccacgag
cttatatctgccgtgcgtttgctgcttcctggagataaatgtcatggcagttttgttttt
aaccgacaggtgctatataataattcaataccttatattggatcagcacctccaccacca
ccggtagtctcccgggtagaaagtggacctggtggtgacaactctaaagggcaactccaa
acattgcttacccgggctggtcattccattccaagctatcgaaccacccaactagcaaac
aatcagtttaggtccgtgtgtgaattcaatggcatgcagtttatgggtcgcccttgccag
acaaagaaacaagcagaaaaagatgctgccgccgaggctttagatcggctcatgagtaac
aagcaagcaggccatgattttattggtaatacgtctacaatgctgaagaaaagcaagaag
aatcccgactaa
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integrated database retrieval system
