Erigeron canadensis (horseweed): 122599271
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Entry
122599271 CDS
T07610
Name
(RefSeq) zinc finger CCCH domain-containing protein 49-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122599271
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ecad03041
]
122599271
Spliceosome [BR:
ecad03041
]
Complex B
Other components
Prp19-related factors
122599271
Complex C
122599271
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
zf-CCCH_RBM22
RRM_1
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_12
zf-CCCH
zf-CCCH_3
zf-CCCH_4
zf-CCCH_10
RRM_YTH1
RRM_occluded
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
122599271
NCBI-ProteinID:
XP_043627691
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All DBs
Position
5:complement(13468502..13473791)
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AA seq
486 aa
AA seq
DB search
MAHRILRDVEADGWERSDFPIICESCLGDNPYIRMTKANYDKECKICTRPFTVFRWRPGR
DARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDSIPKSDVNREYFAE
EHDRRARAGLDYESSYGKERPNDTILKLQRTTPYYKRNRAHICSFFIRGECTRGAECPYR
HEMPVTGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVS
EQDLTDNFYSHGEIESVKMVLQRACAFVTYTTREGAEKAAGELSNKLVIKGLRLKLMWGR
PQVPKAEGEAGLDDARQQAVAHSGLLPRAVISQQQNQFQPPGAAGSQDQQHPPQMHYFNI
PPPPAQHGRAFYPSMDPQRMGAVIHAQEGSGASGSGSGQDQRHQGGPQFAAYPPPPLPPQ
GGGQYYPQYFQQGPPPSYGYGPPPPYQQYPPLSHPSTMPPPGASSEQPYQQKAPEAAATG
PPPQQQ
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atggcacataggatattaagagatgttgaagctgatggttgggaacgatctgactttcca
atcatatgcgagtcgtgcctcggtgacaatccttatattcgaatgacaaaagcaaactac
gataaagagtgcaagatctgcacgaggcccttcacagtctttaggtggagacctggccgg
gatgcgagatacaagaaaagtgagatttgccaaacttgcagcaagctgaaaaatgtttgc
caagtgtgccttttagatctcgaatatggtttgccagtccaggttcgtgatactgcgctc
agtatcaactcaaatgattccatccccaagagtgatgtgaacagggagtacttcgcggag
gaacatgatcgtagggcaagagcaggtctagattacgagtcctcatatggaaaggaacga
ccgaatgatactattttgaaactgcaaagaacaacaccatattataagagaaatcgagca
catatttgcagctttttcatcagaggtgaatgtacaagaggcgctgaatgcccttaccgg
cacgagatgcctgtcactggcgagttatcccaacagaatatcaaagaccgttactacggg
gttaatgatccagttgccttgaaactactgaacaaggcaggtgaaatgccttctctggaa
cccccagaggatgagagcattagaaccctctatgtgggtgggcttgatgcaagagtatca
gagcaagaccttacagacaacttctactctcatggtgaaatcgagtctgtcaaaatggtt
ctccaacgtgcttgtgcctttgttacgtacactactcgagaaggtgccgaaaaagcagcg
ggtgagctctcaaacaaacttgtcatcaagggtcttcggctaaaactaatgtggggtcga
ccacaagtaccaaaagctgaaggtgaagcaggtttggatgatgctagacagcaagcagtt
gcacacagtggattattaccccgtgctgtcatatcacagcagcaaaaccagtttcagcca
ccaggagctgcaggtagtcaggaccaacaacatccaccacagatgcattattttaatatc
ccaccacctccggctcagcatggcagagcgttctatccttctatggatcctcagagaatg
ggagcagtgatccatgcccaagaaggaagcggggctagtgggtcaggtagcggtcaagat
cagaggcatcaaggtggtccgcagtttgctgcatatccaccaccaccactcccacctcaa
ggtggtgggcaatactatccacagtattttcaacaaggaccaccaccgtcatatgggtat
ggtccacccccaccatatcaacaatatcctccactgtctcatccttccacaatgccacca
ccaggagcaagcagtgaacaaccttatcaacagaaagcaccagaggcagctgcaacaggg
cctccaccacaacagcaatga
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