KEGG   Erigeron canadensis (horseweed): 122599341
Entry
122599341         CDS       T07610                                 
Name
(RefSeq) protein RRC1-like isoform X1
  KO
K12842  U2-associated protein SR140
Organism
ecad  Erigeron canadensis (horseweed)
Pathway
ecad03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ecad00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    122599341
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ecad03041]
    122599341
Spliceosome [BR:ecad03041]
 Complex A
  U2 snRNP components
   U2 related factors
    122599341
 Complex B
    122599341
SSDB
Motif
Pfam: Surp RRM_1 cwf21 CID RRM_7 CTK3 SAP
Other DBs
NCBI-GeneID: 122599341
NCBI-ProteinID: XP_043627777
LinkDB
Position
5:complement(36510445..36519149)
AA seq 923 aa
MSSFSITRKKTPFQKHREEEEAKKKRENEEATRVYHEFLESFQGDTGSGLRAFVRGGTVN
EEKVKPETGGNSKEVSGSKKGSRYVPSFLPPPSATKGKENEKQRDEERSKEKNKGKVRNI
DFFMEELKHEQEMRERRNQEREQWQDGRQNATSTLSSRFDELPDEFDPSGKFGSFDDGDP
QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERKRQKNCGFVAFMNRADG
QAAKDEMQGVVVYDYELNIGWGKSVSLPSQSLPAPPPGQMAIRSKEGATVILSGPSGPPV
TAVPTQNSELVLTPNVPDINVVLLEDIRLRKVIDTMALYVLDGGCAFEQAIMGRVRGNPL
FSFLFELGSKEHTYYVWRLYSFAQGDTLHRWRTEPFIMITGSGRWVPPALPTAKSPENEE
SGATYAAGRSRRVETERTLTDAQRDEFEDMLRALTLERIQIKEAMGFALDNADAAGEIVE
VLTESLTLKETPIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEANLPDILESFNDLYR
SITGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRSTFLRSGSSGVVSFHSISGDAPE
TEDKTSSDDTGPDAALAIGKRAAMKELLSLPLAELERRCRHNGLSLVGGREMMVARLLYL
EESEKQRGYELNDSLKYPQNHHREGNVDTGPVGFSGRNHQVEDDFIPEGKGSASMATKIP
IPQPELKAFPNKAKPDSVLPASKWAREDEDSDDEQKRSTKDLGLGYSSSGSENGGGGRNS
TEAILTSSDNGLNEEKRQKLRQIEVALIEYRESLEEQGIQKEEVEKKVAAHQKQLQYKYG
LTNYSEDAPNKRTSAERREKRDDSRESSRKRQRSHHGSESPQRKSSSRNRDKSRTYDSHT
EREKERDHDRDKRRERERDSRRR
NT seq 2772 nt   +upstreamnt  +downstreamnt
atgagttctttttcgattacacggaaaaagacgccttttcaaaagcatcgcgaagaagaa
gaagcgaagaaaaagagggagaatgaggaagcaactcgtgtatatcacgagtttttggag
tcatttcagggggatactggatctgggttaagagcttttgttcgaggaggaactgttaac
gaagagaaagtgaaacctgaaacaggtggaaattccaaagaagtatctggttcaaagaag
gggagtaggtatgttccttctttcttaccccctccttcggcaactaagggtaaagaaaat
gaaaaacagagggacgaagagaggtcaaaggagaaaaacaaagggaaggtaagaaatata
gacttttttatggaggaacttaagcacgaacaagaaatgagagaaagaagaaaccaagaa
cgcgaacaatggcaagatgggcgtcaaaatgctacttcaactctatctagtcggtttgat
gagttgccggatgaatttgatcctagtgggaaattcggttcctttgatgatggagatcct
cagaccaccaatctctatgttgggaatctttcaccccaggttgatgaaaattttcttcta
aggacgtttggaaggtttggacccattgctagtgtgaagatcatgtggccaaggacagaa
gaggagcgcaagaggcaaaagaactgtggttttgtggcttttatgaaccgtgcagatgga
caagctgcaaaggatgaaatgcaaggggtggttgtttatgattatgaattgaatattggg
tggggtaaatctgtttcccttccctctcaatcactccctgcccctcctccaggacaaatg
gcaatcaggagtaaagagggtgccactgtgattctatctggcccatctggtcctccagtt
actgctgtcccaacccagaattccgagttggttcttactcccaatgtacccgatataaat
gttgttctgcttgaagatatccgtcttcgcaaagtaattgatacaatggctctttatgtt
cttgatggaggctgcgcgtttgagcaagctataatggggcgggtccgtggaaatcctctt
tttagtttcttattcgagcttggctctaaagagcatacttactatgtttggaggttgtat
tcctttgctcagggtgatactttgcataggtggcgaactgaacctttcattatgataact
ggtagtgggaggtgggtaccacctgctttgccaacagccaagagcccagagaacgaggaa
agtggagctacatatgctgccggaagaagcaggcgtgtggaaactgaacgtacactgact
gatgcgcaaagagatgagtttgaagatatgcttcgtgcactaacattagaaagaattcaa
atcaaggaagcaatgggttttgcattagataatgcggatgctgctggagagatagttgaa
gttttaaccgagtctttgactcttaaagaaacccctataccaactaaagttgcacgactc
atgcttgtctcagacattcttcataatagtagtgctcctgtaaagaatgcttcagcttac
cgcaccaagtttgaagcgaatctgcctgatatactggaaagctttaatgacctgtatcga
agtatcaccggaagaatcactgctgaggccttgaaggaacgagttctaaaagttcttcaa
gtatgggccgactggttcttattttcggatgcatatgtgaatgggctacgttctacattt
cttaggtctggtagctctggtgttgtgtcatttcattccatatctggcgatgcaccagaa
actgaagacaagactagttctgatgacactggtccagatgcagcattagcaattggcaaa
agggcagccatgaaagaactattgagtcttcctcttgctgagctggaaagacggtgccgt
cacaatgggttatctcttgttggtggcagagaaatgatggtggcacggttgctttatctt
gaagagtcagaaaaacagaggggttatgaactcaatgatagcttgaaatatccccagaat
catcatagagaaggtaatgttgatacaggccctgtgggattttcaggaaggaatcatcaa
gtggaagatgactttattccggaaggaaaaggttcagcgtctatggccactaagattcca
atcccacaacccgagctaaaagccttccctaataaagcaaagccggattctgtattgcct
gcctctaagtgggcccgggaagacgaagacagtgacgatgagcaaaaacgaagtactaaa
gatcttggattaggctattcgtcttctggaagtgagaatggcggtggtgggcgtaacagc
accgaggcaattctcactagttccgataatggactaaatgaagagaagagacaaaaactg
agacagattgaggttgctttgatagaatatcgtgaaagcctggaagaacagggcatacag
aaggaagaagttgaaaagaaagtggcagcacatcagaaacagttacagtataagtatggc
ctcacaaattatagcgaagatgcaccaaataagaggacatctgcagagcgaagggaaaaa
agagatgattcacgtgaatcttcaagaaagcgtcagcgaagtcatcatggcagtgaaagc
ccacagcgtaaatcatccagtagaaaccgtgacaagagcagaacctatgattcacatact
gaaagagagaaggaacgtgaccatgatagagataaacgcagagaaagagagagggacagc
cggagaagatga

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