Erigeron canadensis (horseweed): 122599422
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Entry
122599422 CDS
T07610
Name
(RefSeq) cleavage stimulation factor subunit 77
KO
K14408
cleavage stimulation factor subunit 3
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122599422
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122599422
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
122599422
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
HAT_Syf1_CNRKL1_C
TPR_19
TPR_16
TPR_9
TPR_2
TPR_Slam
Motif
Other DBs
NCBI-GeneID:
122599422
NCBI-ProteinID:
XP_043627865
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Position
5:27283781..27291181
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AA seq
743 aa
AA seq
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MEDKYSIESAESLANAASRLPITEAVPVYEQLLATFPTAAKYWKQYVEAHMAVNNDDATK
QIFSRCLLNCLQIPLWRCYINFIRKVNEKKGLEGQEETRKAFEFMLGYVGSDIASGPVWT
DYINFLKSLPAQNAQEESQRMIAIRKVYQKAIVTPTHHVEQHWRDYENFENSVSRALAKG
LVSEYQPKYNSARAVYRERKKYVDEIDWNLLAVPPAGSLKEELQWTAWKKFLAFEKDNPQ
RIDTASANKRISFTYEQCLMYLYHYPDIWFDYATWHAKSGSIDSAIKVYQRSLKALPDCV
LLRYAYAELEESRGAIQAAKKVYESLFGDGVSATALSHIQFIRFLRRTEGVESARKYFLD
ARKSPSCTYHVYVAYATMAFCMDKDAKIAHNVFEVGLKRFMHEPGYILEYADFLYRLNDD
RNIRALFERALSSLPPEDSVEIWKRFFQFEQTYGDLTSMLKVEQRRKEALARTSEEGASA
LETSLQDVVSRYSFKDLWPCSSKELDHLSRQDWLLSNANKKVELSTLANEADKSPGQLLN
YSNLSSKVVYPDTSRMVVYDPRQKPDLTTPALPSTASPLTSSGTVPLVTGGVLNAPNVLP
KALPPALAAFIASLPPAEGPLPDVDFVLSICLQSTLPVAETVKSVAQPQARPASTDAPGS
TKSHLFKPRDRQHGKRKEADNQDDDDTNPVQSQPLPKDMFKIRQLRKARVAGAQTGTASY
GSVQTGSASYGSGLSGEQSGSYG
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atggaagataaatacagcattgaatctgcagaatcacttgccaatgcagcatctcgattg
ccgataacagaagcagtacctgtatatgaacaacttttggctacctttcctactgcagca
aagtattggaaacaatatgttgaagcacatatggctgttaataatgatgatgctacaaaa
cagatatttagtagatgccttttgaattgccttcaaattcctctatggcggtgctatata
aattttattaggaaagtcaatgagaagaaggggttagagggtcaagaagaaacccggaaa
gcttttgaatttatgctcggttatgttggatcggacattgcttctgggcctgtgtggacc
gactatattaacttcttaaaatccttaccggctcaaaacgcacaagaagagtcgcagagg
atgattgctatacggaaagtataccaaaaagctattgtgactcctacccatcatgtagag
caacactggagagactatgagaattttgaaaattcagttagccgtgctctggcgaaagga
ctggtatctgagtatcagccaaaatacaacagtgcaagggctgtttatagagagcgaaag
aagtatgtcgatgagattgattggaacctgcttgctgtgccaccagcgggctctctcaag
gaagaattgcaatggacagcatggaaaaagttcttagcatttgagaaggacaaccctcaa
aggatagatactgcgtctgcgaacaagcgcatctcatttacttatgagcagtgcctcatg
tatttatatcattacccggatatatggtttgactatgctacatggcatgcaaaaagtggt
tcgatagattctgccatcaaagtataccaacgatcattgaaggctcttcctgattgtgtg
ttgctaaggtatgcttatgctgagctcgaggaatcccgtggcgcgattcaggccgcaaaa
aaggtatatgaaagcctttttggagatggtgtcagtgcaactgccttatcacatatacag
tttattcgatttttaagaagaacggaaggtgtcgagtcagctcgcaagtattttttggat
gcgcgaaaatctccaagttgtacgtaccatgtatatgttgcttatgcgacaatggcattt
tgtatggacaaggatgcaaagattgcacacaatgtgtttgaagttgggttgaaaagattt
atgcatgagcctggatacattcttgaatatgcagattttttatatcgcttgaatgatgat
agaaatatcagggctttatttgaacgtgcgttaagctcgcttccacccgaagattctgtc
gagatttggaagaggttttttcagttcgagcagacatatggagaccttactagcatgtta
aaggtggaacaaagaaggaaagaagcccttgctagaacaagtgaagaaggagcatcagct
ttagaaacttctttgcaagatgttgtatcaagatatagttttaaggatctatggccatgc
tcctcaaaagaactggatcatttatctcgtcaagattggcttttgagtaatgcaaacaaa
aaagttgagttatcaactctggcaaatgaagcagataaaagtccaggacagttactaaat
tattcaaacttatcctctaaagttgtttatccagatacctcgaggatggttgtctatgac
ccgagacaaaaacctgatttaaccactcctgctcttccttctactgctagtccattgacc
agttctggtacagtaccattagtcactggcggagtgctaaatgcccctaatgtgcttcca
aaagcattgccacctgctctggcagcatttatagcaagtttgccccctgcagaaggtcca
ttgcctgatgttgattttgttctatcaatatgtttacaaagcactttacctgttgctgaa
actgttaagtcagtggcacagccccaagccaggcctgcttcaactgacgctcctggatct
accaaatcccatttgttcaaaccgagagacagacaacatgggaagagaaaagaagcagac
aatcaagacgatgacgacaccaaccccgttcaaagtcaaccacttcctaaagatatgttc
aagatacgacaactaagaaaagcccgagttgctggtgcacaaactggaactgcatcatat
ggtagtgtacaaactggatctgcttcatatggcagtggattatcaggggagcagtctggt
agctatggctga
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