Erigeron canadensis (horseweed): 122599570
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Entry
122599570 CDS
T07610
Name
(RefSeq) zinc finger CCCH domain-containing protein 16-like
KO
K14321
nucleoporin-like protein 2
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122599570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122599570
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
122599570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf-CCCH_4
zf_CCCH_4
zf-CCCH_DUS3L
zf-CCCH_2
Torus
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
122599570
NCBI-ProteinID:
XP_043628027
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Position
5:6455532..6460921
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AA seq
399 aa
AA seq
DB search
MHPRKELCRNFQRGYCQYGERCRFLHASQQQQAKPNPFGLGTQSSLTFPNTNSSQPQKPN
PFGFGVKNNSQTTFNSNQFKPGENKWSRFGPTNAPASQKEDKQSSALNHVCTDSESCKSQ
IAEDLKNEKPVWKLTCYGHSRNGPCDIVGDISYEELRAVAYDEVKRGTGIQSIVERERSL
LSSKLIEFENLLRNPYPPPQNSTLTTQNAFPRTNVPSSAPGFNQVGTNFNSGANTNLFSQ
TMQNIGPTPVTSFSQLNTSFQMSSAASNNAFGPVSQFQAPTQISTASQNTFAFGIPGQLS
SQPSQQSFVSSFPASASSFTNQFPVAATSPNLDSVHQQPSGPFGVQNPSANAPPGAVSSL
QMTQNLPSASSDNDNSIWLKDKWRAGEIPEEAPPDGVVY
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atgcatccccggaaagaactttgccggaacttccagcgtggctactgtcaatatggcgaa
cgttgcagatttcttcatgctagtcaacaacagcaagcaaagccaaacccttttggactt
ggtacacaaagcagtttaacgtttccgaatactaatagttctcaacctcaaaaacccaat
ccgtttgggttcggtgttaagaataatagccaaaccacatttaactctaatcagttcaag
cctggtgaaaataagtggagtcgatttggcccaacaaatgctccagcctcacaaaaagag
gataagcagtcttcggcacttaaccacgtgtgcacagattcagagtcctgcaagagtcaa
attgctgaagatcttaaaaatgagaaaccagtttggaaacttacatgttacggtcactct
agaaatggcccttgtgacattgttggagatattagctatgaagaattacgagctgttgca
tatgatgaagttaaacgtgggacgggcattcagtcgattgtggagagagagaggagctta
cttagttccaagttgattgaatttgaaaatctacttcgtaatccctacccacctccacaa
aattcaacccttactacccaaaatgcctttcccagaactaatgtcccttcttcggctccg
ggtttcaaccaagtgggtacaaacttcaattctggagctaatacaaatttattctctcaa
acaatgcaaaatataggcccaactccggttacaagtttcagtcaattgaatacaagtttt
caaatgagttcggctgcctcaaataatgcttttgggccagtaagtcagttccaagctcct
actcagatttcaactgcatcccagaacacctttgcttttggaattccaggtcaactgagc
agtcaaccctctcaacagtcatttgttagctccttccctgcctcggcaagtagctttacc
aaccagttccctgtcgctgcaacttcaccaaatcttgattcggtacatcaacagccatct
gggccatttggtgtacaaaacccttctgctaatgcacctcctggagcagtttcaagctta
caaatgacgcaaaaccttccaagtgcaagtagtgataacgataacagtatatggttaaaa
gacaaatggagagcaggagagattcctgaagaagcccctccagacggagtcgtttattag
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