Erigeron canadensis (horseweed): 122599669
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Entry
122599669 CDS
T07610
Name
(RefSeq) DNA-directed RNA polymerases II, IV and V subunit 3-like
KO
K03011
DNA-directed RNA polymerase II subunit RPB3
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03020
RNA polymerase
ecad03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
122599669
09124 Replication and repair
03420 Nucleotide excision repair
122599669
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecad03021
]
122599669
03400 DNA repair and recombination proteins [BR:
ecad03400
]
122599669
Transcription machinery [BR:
ecad03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
122599669
DNA repair and recombination proteins [BR:
ecad03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
122599669
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_L
RNA_pol_A_bac
Motif
Other DBs
NCBI-GeneID:
122599669
NCBI-ProteinID:
XP_043628147
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All DBs
Position
5:26770754..26775585
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AA seq
323 aa
AA seq
DB search
METGLQSYQRFPKIKIRELKDDYAKFELRNTDASMANALRRVMISEVPTIAIDLVEIEVN
SSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCINDQTL
DVTSKDLYSSDHTVVPVDFSESGGSAFENAEDSRGITIVKLRKGQELRLRAIARKGIGKD
HAKWSPAATVTFMYEPEIHINEEMMETLSLEEKTSIVDSSPTKVFGINPQTGQVVVVDPE
AYTYDDEVLKKVEAMGKPGLVEIYAKEDSFIFTVESTGAVKASQLVLNAIDVLKQKLDAV
RLLEESLEADDQFGELGAHMRGG
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccggactccaatcataccaacgtttccccaaaatcaaaatccgcgaactcaaa
gacgactacgcgaaattcgagctacgaaacaccgacgcctcaatggcaaacgcgctccgg
cgcgtgatgatttccgaagtcccaacaatcgcaatcgatttagtcgaaatcgaagtcaac
tcctccgtccttaacgacgagtttatcgcgcatcgtttaggtttaatcccattgacaagt
gagagagcaatgagcatgcggttctcacgtgactgcgacgcgtgtgacggagacgggcag
tgtgagttttgttcagttgagtttcatttgagagcaaaatgtattaatgatcagactctt
gatgttactagtaaggatttgtatagctctgatcatactgttgtccctgtcgatttttcg
gagtccggtggctcggctttcgaaaacgccgaagattcgaggggcatcacaattgtaaag
ctgcgcaaagggcaagaactgaggctaagagcaattgctcgtaagggaattggaaaagat
catgccaaatggtcacctgctgcaactgtcactttcatgtatgagcctgagatccacatt
aatgaagaaatgatggaaactctatcacttgaggagaagaccagtatcgtggatagtagc
cctaccaaagtctttggcataaatccccaaaccgggcaggtcgtagtggtggatcctgag
gcatacacatatgatgatgaagtgctgaagaaagtggaagccatggggaaaccaggtctt
gtggaaatctatgctaaagaagatagttttatcttcactgtcgaatccactggtgctgtc
aaggcatctcagttggtgcttaatgcaattgacgtcctaaaacagaagcttgatgcagtt
cgcctgttggaggaatctctggaagctgatgaccagtttggggaattaggtgctcatatg
cgaggaggttga
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