Erigeron canadensis (horseweed): 122600078
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Entry
122600078 CDS
T07610
Name
(RefSeq) serine/arginine-rich splicing factor SR45 isoform X1
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03013
Nucleocytoplasmic transport
ecad03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122600078
03015 mRNA surveillance pathway
122600078
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122600078
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
122600078
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
DUF2457
Motif
Other DBs
NCBI-GeneID:
122600078
NCBI-ProteinID:
XP_043628669
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All DBs
Position
5:complement(10236638..10243702)
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AA seq
414 aa
AA seq
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MAKPGPRGRPSRSGSVSSGSRSRSRSRSISSSSRSSSRSRSYSSSSRSASSRSRSPPPKK
SSGDGAKRGRSPVPQSKKASPPPRKASPVPESLVLHIGQLTRNVNENHLKEIFGNFGEVV
HVRLAMDHIVNLPKGSGYVEFKVRADAEKAQLYMDGAQIDGKVVQAKFTLPERKRVSPPP
KPLPTVSRRDVARNDNAGKNDNAGIDAEKDEPRRVAAGSPRRRPPSPLRRRSPVARRGSP
RRDLESPPRRRVDSPPRRRPESPYRRGGSPPPRRRPASPPRGRSPSPPGRRYNRSPPRGP
IRRRSPPPRRRSPGRARSPPPRRSSLSRRRSRSPPIRRPGRSRSRSISPRRARPPVGRRG
RSSSYSDSPSPRKVPRKVSRSRSPKRPLRRRSSSSNSSSSSSLPPPPPPPPRKP
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaccaggcccccgtggtcgcccctccaggtccggctccgtctcatccggctca
cgctcacgctctcgctcccgatcaatctccagctcatcccgctcatcttctcggtccaga
tcttactcttcttcttctcgcagtgccagttctcgcagccgcagtccccctcctaaaaaa
agttctggtgatggagcgaaacgaggccgttctcccgtgccgcaatcgaaaaaggcgtcg
cctcctccaaggaaagcttctccagtgcccgagtcacttgttcttcacattggtcagctc
actcggaatgtgaatgaaaatcatttgaaagaaatttttggaaactttggtgaagttgta
catgtacgattggctatggatcacattgttaaccttccaaaaggctctggatatgttgag
tttaaggtccgagctgatgcagaaaaagcgcaattatacatggatggggcccagattgat
gggaaggttgttcaagccaagtttactttgcctgaaaggaagagggtatcaccacctccc
aagccattgcccactgtttcaaggagagatgtagctagaaatgataatgcaggtaaaaat
gataatgcaggtattgatgctgaaaaagatgaaccaaggcgtgtagcagctgggtctcct
cgccgcagacctccatctccattacgccgccggtctcctgtagctcgcagagggtctcct
aggagagatctggaatctcctccccgccgtcgtgtagactcccctcctagaagacggcca
gaatctccttaccgtcgtgggggttcgccacctcctcgaaggcggcctgcatcacctcca
agaggccgctcaccttctcctcctggaagacgttataatagatcacctcctaggggtcca
attcgaaggcgttcacccccaccaagacgccgttcacctggacgagcaaggagtcctcct
cccagaagatcttcgttgagtcgccgacgtagtcgctcaccacctatcagaaggcctggc
cgttcacgttctagatcaatctcaccaagaagggcacgacctcctgttggtaggcgtggt
aggtcatcatcttactcagattcaccaagtccacgaaaggtgccaaggaaggtatcaaga
agtcgcagtcctaaaaggcccctaagaagaagaagcagcagcagcaacagcagcagtagc
agctcactaccacctccacctcctcctcctccccgtaaaccttga
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