Erigeron canadensis (horseweed): 122600102
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Entry
122600102 CDS
T07610
Name
(RefSeq) polygalacturonase-like
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad00040
Pentose and glucuronate interconversions
ecad01100
Metabolic pathways
Module
ecad_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
122600102
Enzymes [BR:
ecad01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
122600102
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GFIT
Motif
Pfam:
Glyco_hydro_28
Phage_Gp111
Motif
Other DBs
NCBI-GeneID:
122600102
NCBI-ProteinID:
XP_043628695
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Position
5:29378027..29379937
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AA seq
397 aa
AA seq
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MGSKSILVFLKFMFFVIAQAEVFDVTKFGAKPDKEISSALKEAWAAACSASNPSTVLVPK
GRFPLTVVEFKGPCKAPIEVKIDGMLVGPEDPVVIPKGLQWVTFSYVTSLTLSGSGTLDG
LGAAMAWALNDPATTAKKGSPLQYNLSFNFIKNSLITGITSKDSKNFHVNLCSCTNVTFD
KFNAIAPPGSPNTDGIHIGWSKDITIKDSKFETGDDCVSIGDGCENLHIEGVKCGPGHGI
SVGSLGKNAGEKPVKGVFVKDCTFTSTENGVRIKTWPDSQPGEVVDMHFEDLTMDKVNNP
IIIEQDYCPHVQCKKENPSKVKVHDIFIKNVKGTSNSPEVVKLRCSKANNGCENVHITDI
NLTYDGPSGPAIQECHNVKPVYAGEIVPPGCKAAAAA
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgggatccaaatcaattctagttttcttaaagttcatgttttttgtcattgcacaagct
gaagtttttgatgtcaccaaatttggtgccaaaccagataaggaaattagctcggctttg
aaagaggcatgggccgccgcatgttctgcatctaatccaagcacagttctggttccaaaa
ggtcgatttcccttgaccgtggtcgagtttaagggaccatgcaaagctcctatcgaggtt
aagatcgatggaatgttggtaggtccggaagatcctgttgtcattccaaaaggactgcaa
tgggtcacatttagctatgtcacttccttgacattatcaggttcgggtacattagatggg
cttggagcagccatggcatgggcactaaacgatcctgcaacaactgctaaaaaaggatca
ccccttcaatataaccttagcttcaacttcatcaagaattctttgattactggtataact
tcaaaggacagcaagaatttccacgtcaacttgtgctcatgtacaaatgtaacgttcgac
aaattcaatgccattgcacctccagggagtccaaacacagatggaattcacatagggtgg
tcaaaagacatcacaatcaaggattccaaatttgaaaccggtgatgattgtgtgtcaatc
ggtgatggatgtgagaacttgcacattgaaggagtgaaatgtggtccgggtcatggtatt
agtgttggaagtttgggtaagaacgctggtgagaaacccgtaaagggagtttttgtgaaa
gattgcacatttacatccacagagaacggcgtgaggatcaaaacatggcccgattctcag
cctggagaggttgttgatatgcattttgaagatcttaccatggataaagttaataaccct
attattattgagcaagattattgccctcatgtccaatgcaagaaagagaatccatcaaag
gttaaggttcacgatattttcattaagaacgtcaagggaacttcaaattcgccagaagta
gtaaagctaagatgcagcaaggccaataatggatgtgagaatgtgcatattacagacatt
aatttgacatatgacggaccgtcaggccctgcaattcaagaatgtcacaatgtgaagcca
gtatatgccggggaaattgttcctccgggttgcaaagcagctgcagcagcttga
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