Erigeron canadensis (horseweed): 122600108
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Entry
122600108 CDS
T07610
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 13
KO
K15164
mediator of RNA polymerase II transcription subunit 13
Organism
ecad
Erigeron canadensis (horseweed)
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecad03021
]
122600108
Transcription machinery [BR:
ecad03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
CDK-module
122600108
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MID_MedPIWI
Med13_N
Med13_C
Motif
Other DBs
NCBI-GeneID:
122600108
NCBI-ProteinID:
XP_043628708
LinkDB
All DBs
Position
1:58817153..58829571
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AA seq
1865 aa
AA seq
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MWTNVFKIGGLHQVSWFQFLPNEFDPNLSDRSLKSNQRDVGAQLVLASHLQLQKDGFLST
WGNSFVGPWDPSQGLHNPDEKIKLWLFIPGRHTSVVDKAKAAVSKLRALASGVWLAPGDS
EEVSAALSQALRNCIERALVGLSYMRFGDVFSRYHPSSQGEELFRKGQPVLEFVFTATDE
GVFVHVIISAKHVRSLLNGDMEAILKRASNNSGDKLPVIVSPHGMRGRLTGFCPGDLVKQ
LYFSSGKSKASNGIVGLPYPISQSSGCQLRGQNCYLEVTLGCESAESDKLQPSSSTKNFS
KSESLYEKTFIYPAEAVLVPVMQTSSARSSLKRFWLQNWMGPSLSGSSFSMQCDNGMIMD
GSWQHGYNSSGNSNSSSNSSSTSSDSDYRMTGEAGDLEADADSLSCIKSGLTSADQMHID
GSKLGSKRSRNGMTESYGQAGTGTMNEFGSLEVNEQGGSQWDWDDDDRGVVMDIQALLSE
FGDFGDFFETDALPFGEPPGTEESQTPMFSATDGGDASSSPFTGMLDASDPMILPVGFSS
FESFNPPSTIVEESISKNQEATKDAVSSGSMNYNPPANNGEFDYLIKAEALMTFAPEYGA
VETPTADLLSSVIKSPYIPKSRTVESANSSSNNYVYSAIPPPRHDVSNDKSSIGATTKDK
YSLLQSKSYYTQIESVKDKKDEKPSSRDNDITSHDDLAPSTLSGFNSSNTGPRSSARSKM
PGTENFLISSKTAIANELECIMFQAFMCRIRHTILAPASSLPSGLNRLSGNNVLYQMHGE
SNVLTDNMSSKYDIKKKETIPIRIAGDLDGGLLDGPLNSPVGVWRTVGVAKGSKTTTQSI
EPFGALPHSSFNEEGMLSYGQRQPLLELLDGMTLLFQQATSFVDVTLDADYGDGPYGWLA
MQEQWRHGFSCGPSLVHAGCGGVLSSCHSLDIAGVELADPLSADVHASYAITLLQSDIKS
ALKSAFGTFEGPLSVTDWCKGRNGPSDVFSAESSASINDCRDTSLEPISPSQSAGGSTSC
PSKDGNRVDDITESDQQLGLRPALLVVPFPAILVGYQDDWLKTSATSLQHWEKAPFEPYA
MQKHMNYCVICPDIDPLTTAAADFFQQLETVYETCKLGTHSPQTFGNQTKDSGKWSSSGF
VLLDCPQSMKIESDSASLVGSISDYFLSLSNGWDLKSFLKSLSKVLQALKLGSCFAPNSK
EGNSAPCTVIYVVCPFPEPVSVLKTVVESCVAIGSAISPSSDKERRSAMQNQVGKALSCS
TAVDEASISNIVTISGFTIPKLVLQIVTVDAIFRVTSPSLNEPVILKEIAFTVYNKARKI
SRGLSNDVIPSVSIQGRSQSHSSMMQMNSPIPGMWKDPIGPRLGQRESELDAGLRAGTWD
NSWQMSRPGGLGGDPNRTSEYLPQDESKYMFEPLFILAEPGSSERGMSPESLKLLADDGT
SSDAGLGSQIDGSDDGFGSNLQKAPPSLHCCYGWTEDWRWLVCIWTDSRGELLDSCTFPF
GGISSRQDTKGLQFLFVQILQQGCQILQACSPDTSTARPRDFVITRIGCFFELECQEWQK
ALYSIGGSEVKKWSLQLRRSVPDGISASSNGGSLQQEMNMIQERNLPAHSKGSTFMKGGL
GQPSTRKQLIGGGGGHISMDNSKGLLQWVQSITFVSLSIDHSLQLVYQADSSPGTTQGSG
VMGHSSYVEGFTPVKSLGSASASYIFVPSPSMRFLPPNPLQLPTCLTSESPPLAHLLHSK
GSAIPISTGFVVSKAVPSMRKDSRSNCKDEWPSVLSVGLVDYYGGSNSNNNNEKTKGMGK
LGMENHLILERVAAELHALSWMTVSPAYLERRTSLPFHCDMVLRLRRLLHFADKELSQIS
DKPEI
NT seq
5598 nt
NT seq
+upstream
nt +downstream
nt
atgtggacaaatgtcttcaaaattggtggtctacatcaagtatcatggtttcagttcctc
ccgaatgaattcgatcccaatctatctgatagaagtttaaagtcgaatcaaagagatgtt
ggtgcacaattggtgcttgcatcccatctgcagttgcaaaaagatgggtttcttagtaca
tggggtaattcgtttgttgggccttgggatccatctcagggactacataaccctgatgaa
aaaattaagctatggctttttataccgggccgccatacatctgtcgttgacaaggctaaa
gctgctgtgtccaaattaagagctcttgcatctggagtctggttggcaccaggggattct
gaagaggtgtcagctgcactatctcaagctttaaggaattgtatagaaagagctttagta
ggactatcatatatgagatttggggatgtattctcgagataccatccatcttcacaaggg
gaagagctattcaggaaaggccagccggtgcttgaattcgtttttaccgcaacagatgag
ggtgtatttgttcatgtcataatatctgcaaaacatgttcggtcacttttaaatggtgac
atggaggcaattttgaaacgcgcttctaataattcaggtgataagcttccagttattgtc
tcacctcatgggatgcgtggcaggcttactggattttgtcctggtgatctcgtgaagcaa
ttatatttcagctccgggaaatctaaagcttcgaatggaattgtgggtcttccataccca
atttcgcaaagttctggctgccagttaaggggacaaaattgttatcttgaagtaacacta
ggatgtgaaagtgctgagagtgataaactgcaaccatcaagttcaactaaaaacttttca
aagtctgagtcgctatatgaaaaaacatttatatatccagctgaggcagtccttgtacct
gttatgcagacttcatctgctagatcgtctctcaaaagattctggctgcaaaattggatg
gggccatcattgtctggttcgtcattctctatgcaatgtgataatggcatgataatggat
ggatcatggcaacatggttacaatagtagtgggaatagtaatagtagtagcaatagctct
agtacatctagtgacagtgattataggatgactggggaagcaggggatcttgaggctgat
gctgattctctatcatgcataaaatctggtttaacatctgcagatcaaatgcatatcgat
ggttctaaattgggtagtaagcgatctcgaaacggaatgaccgaatcttatggtcaggca
ggtacagggacaatgaatgaatttggttcattggaagtcaacgagcagggtgggtctcaa
tgggactgggatgatgatgacaggggtgttgtcatggatatccaagcacttctttcagag
tttggagattttggtgacttttttgaaactgatgctttaccatttggtgagccgccaggg
acagaggagtcacagacacccatgttttctgcaacagatggtggagatgcaagtagcagc
ccgtttactgggatgttggatgcctctgacccaatgattttaccagttgggttttcatct
tttgagagctttaatccaccatcaaccattgtagaggaatcaattagcaaaaatcaagaa
gctacaaaagatgctgtatcttctggatcaatgaattacaatccaccagctaataatggt
gagttcgattatttgattaaagctgaagccctaatgacatttgctccagaatatggagca
gttgaaaccccaacagctgacttgctatcatctgttatcaaaagcccgtatattccaaaa
tctcgaactgtggaaagtgcaaattccagttcaaataattacgtatattctgcaataccg
cctcctcgtcatgatgtatctaatgataaatccagcattggtgcaactacgaaagacaaa
tattctttgctccaatccaaaagttactacactcagatcgaaagcgtaaaagataaaaag
gatgaaaaaccgtcatcccgtgataatgatattacttcacatgatgatcttgcaccgtca
acgttgtcgggttttaattcttcaaatacgggtcctagatcttccgctcgaagtaagatg
ccgggaacagaaaattttcttatatcatcaaaaacggctatcgcaaatgaactcgagtgc
attatgttccaagcatttatgtgcagaattagacatacaatattagctcccgccagctca
ttgcccagtggattgaataggttatccggaaataatgttttgtatcagatgcatggtgaa
tcaaatgttttgacagacaatatgtcgagtaaatatgatataaaaaagaaagaaacaata
cccattagaattgcgggggatttggatggtgggctacttgatgggcctcttaattcacct
gttggtgtttggcgaaccgttggtgttgctaaaggttcaaaaacgacgacacaaagtatt
gaaccatttggtgcattacctcatagttcatttaatgaggaagggatgctgtcatatggt
caaaggcagcctcttttggagcttcttgatgggatgacattactttttcaacaagcaaca
tcttttgttgatgtgacattggatgcagattatggggacggtccttatggttggctggca
atgcaagagcagtggcggcatgggttttcttgtgggccgtctttagttcacgctggttgt
ggtggggtcttgtcttcttgtcattctcttgatatagccggtgtggaacttgcagatccg
ctctctgctgatgttcatgcgtcgtatgctattactttgcttcagtctgacataaaatca
gccttgaaatcggcttttggcacctttgagggaccattgtcggtcactgattggtgcaaa
gggcgaaatggtccatctgatgtattttcagctgaatcatctgcaagcataaatgactgt
agagatacttcccttgaacctataagcccatctcagtctgctggtggatctacatcatgt
cctagcaaagatggaaatcgagtggatgacataaccgagtcagatcagcaacttggactc
aggcctgcacttcttgtagttccctttcctgctatacttgtcggataccaggatgattgg
cttaagacctcagctacctctcttcaacactgggaaaaagctccttttgaaccatatgct
atgcagaaacatatgaattattgtgtcatatgtccggatatcgacccccttacaactgcg
gctgcagacttcttccaacagcttgaaactgtgtatgaaacgtgcaaattaggaactcat
tcacctcaaacttttggaaaccaaacaaaggattcggggaaatggtcgtcttctggtttc
gttttacttgattgtccacaatcaatgaaaatcgaaagtgatagtgcatctttggtgggt
tccattagtgattattttctttctttgtctaatggttgggatttgaaaagcttcttgaag
tccctctcgaaagttttacaagccctaaaacttggttcatgctttgctccgaactccaaa
gaaggaaacagcgctccttgtacagtaatatatgtggtgtgcccgttcccagagccagtt
tctgttttaaagactgttgttgaatcatgcgtagctatcggttcagctatttccccctct
tcagataaagaaagaaggtctgcaatgcaaaatcaagttgggaaggctttaagttgctct
acagcagtagatgaagcatcgatatcaaacattgtgacaatttcgggttttactatccct
aaattggtgttacaaatcgtaactgtcgatgcaatctttagagtgacaagtccatctctt
aatgagccggttattcttaaagagattgctttcacggtctacaataaagcacggaagatt
tctcgaggattatctaatgatgtcattccatcagtttcgattcaaggtcgctctcaatct
cattcaagtatgatgcagatgaattctccaatccctgggatgtggaaagatcccattggg
cctcggctaggccaaagagaaagtgaacttgatgctggtttgagggctggtacatgggat
aactcatggcaaatgtctaggcctgggggattgggaggggacccgaacagaaccagtgaa
tatcttcctcaagatgagtcaaagtacatgtttgagccactttttattctcgcggagccc
ggctcttcagaaagaggaatgtcacctgagtctttaaagcttttagcggatgatggtacg
agttccgatgccgggctgggttctcaaatagacgggtcggatgatgggtttggctccaac
ctacagaaagcaccaccaagtctacattgttgctatggatggaccgaggattggcgttgg
cttgtctgcatatggacagattcgagaggcgaattgcttgacagctgtacgtttccgttt
ggtggaattagcagtagacaagacacaaaagggctgcagtttctttttgttcaaatttta
cagcaaggttgtcagatacttcaggcatgttctccagatacaagcacagcaaggcctcga
gattttgttatcacacgcattggatgcttctttgagctagagtgccaagaatggcagaaa
gccctttattctattggtggttcggaggtcaaaaagtggtctttgcagcttagacgatcg
gtacctgatggaatctctgctagcagcaatggtggttcattgcaacaagaaatgaatatg
atacaagaaagaaatctaccagctcattctaaaggttctacctttatgaaaggtgggttg
ggtcaaccgtcgactagaaagcagctcataggtggtggtggaggtcatatttctatggac
aactccaagggtttgcttcaatgggttcaaagcatcacttttgtatcattgtcaattgac
cattccctacagttggtttatcaagcggactcatctccaggcacgactcaaggcagtgga
gtaatgggccactctagttatgttgaagggttcacgcctgtaaagtcccttgggtctgct
tctgcgtcatatatatttgtaccttcacctagtatgcggtttctcccccctaaccctcta
cagctcccaacctgcctgacctcagaatcaccaccactggcccatcttcttcacagcaag
ggttctgctattcccatttctacaggttttgtagtctcaaaagccgtgccttctatgagg
aaggattctagaagcaattgcaaagatgaatggccttccgttctctctgttggactagtc
gactattacggaggtagtaatagtaacaataataatgagaaaacaaaaggcatgggcaaa
ctgggaatggaaaaccatttgattctagagcgtgtggcagctgaactacatgcattgtct
tggatgacggtgagcccagcatacctagaaagacgaacatcactaccttttcattgtgat
atggttctcaggcttagaaggcttctacattttgctgataaagaactttcccagatttcc
gataaaccagaaatctag
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