Erigeron canadensis (horseweed): 122600476
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Entry
122600476 CDS
T07610
Name
(RefSeq) DNA mismatch repair protein MSH7
KO
K08737
DNA mismatch repair protein MSH6
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
122600476
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ecad03400
]
122600476
DNA repair and recombination proteins [BR:
ecad03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
122600476
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
AAA_29
RepB-RCR_reg
Motif
Other DBs
NCBI-GeneID:
122600476
NCBI-ProteinID:
XP_043629130
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Position
5:1825489..1837845
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AA seq
1223 aa
AA seq
DB search
MRQKSILSFLLKPPPPSTKAPENDKPVVIRAPVAVPDEKPQLRNIAASIDEIRGTDTPPE
KEQRSLFPVKSVSGGGETDGVNRNGHSLFSSIKHKFMKPNSAENKPSDRSSLDDKPANDN
VKSSNYNCSHQKDKESSASVSTRMKNVINVEEINHEGDTIKSKFMRPNIVEKASDRNFLN
GNHENVNMPSNIYSSSNGTDKESSAFGFPRMKNWINVDETTCEMYRGNRLHVDCDDDITG
PETPGTRPLVPRLKRVQEDRCNFGSATTQSNNKRVKFSDALLAKNTKDELSSEMASRLVP
PLKRVQEDRCNFGSATTQSHSKRVKFSDALLAKKTKDEMSSEMASKFDWLLPSKIKDANG
RRPNNPLYDKRTLYIPPDVLKKMSASQKQYWSVKSQYMDVLIFFKVGKFYELYELDAEVG
HKELDWKMTMSGVGKCRQVGITEYAIDDAIEKLLARGYKVGRVEQLETSEQAKSRGATAV
IQRKLVHVLTPSTLMHGNIGPQAVHLFALKEGVRSGDDGTIAYGFAFVDCAALQFWVGSV
IDDASCAALGALLMQVSPAEVIFESQGLSKEAQKALNKYSLMGSVASRMTPAQPATDFID
SSEARNFIQLKGYFKGSSNAWDCALDGVLHQDIALCALGGLTNHLSRLKLDDALRNGSIL
PYEVYKGCLRMDGQTMANLEIFSNTVDGGISGTLYKYLDNCVTSSGKRLLRKWLCQPLKD
AEEINQRLNVVEELMGRAEIMALIPQYLRKLPDLERFLGQIKATFQSSALLLLPLIGNKI
LKQRVKAFGSLVKGLRAGMNLLMLLQKENDVFSLLLKIFTLPVISGNDGLDKFLTQFEAA
VDSDFPNYQAHEIKDSDAETLSILIELFMERANEWFQIIVALNCTDVLRSFAITANFSCM
AMCRPVIVPRSNSSCSNQASKGPTLHMKGLCHPYALGESGGTPVSNDLCLGDNDAGYNPR
TMLLTGPNMGGKSTILRATCLAVVLAQLGCYVPCEMCVLSPVDIIFTRLGATDRIMTGES
TFLIECTETASVLQNATQDSLVILDELGRGTSTFDGYAIAYAVFRHLVEKVNCRLLFATH
YHPLTKEFALHPHVMLQHMACTFKSISNNSASTNQELVFLYRLTNGACPESYGMQVALMA
GIPKKVVETAMKKAEVMKTKIRVSFQSSERRSEFSTLHEEWLKNISAITEVEAHKLEDGD
EDDAFDTLVCLQHEIKCSNKKLR
NT seq
3672 nt
NT seq
+upstream
nt +downstream
nt
atgcgccagaaatctatactatccttccttctgaaaccgccgccgccgtcaacaaaggcg
ccggaaaatgacaaaccggtcgtcatcagagctccggtggctgttcccgacgagaaaccg
caacttagaaatatagccgcatctatcgacgaaatcagaggaaccgacactccgccggag
aaagagcaacgttcgctctttccggttaagtcggtttccggcggcggtgaaacggatgga
gtaaacaggaacggacattcgttgttttcgagtattaagcataagtttatgaaacctaat
agtgctgaaaacaagccttctgataggagttcattagatgacaaacctgcaaatgataat
gtgaaatctagcaactataattgctcacatcaaaaagacaaggagagttcagcttctgtt
tctacaagaatgaaaaatgttatcaatgttgaagaaattaaccatgagggggatactatt
aagtctaagttcatgaggcctaacattgtggagaaggcttctgataggaattttctgaat
ggaaaccatgaaaatgttaacatgccatctaacatttatagttcctcaaatggaacagac
aaagagagttcagcttttggttttccaagaatgaaaaactggattaatgttgacgaaact
acttgtgaaatgtatagaggaaatcgcttacatgtagattgtgacgatgatataacaggg
ccagaaactccaggaacacggccactggttccacgtctgaagcgagttcaagaggataga
tgtaattttgggtctgccactacacaatccaataacaaaagagtgaagttttctgatgct
ttactggctaaaaatacgaaagatgaattgtcatctgaaatggccagtagattggttcca
cctctgaagcgagttcaagaggatagatgtaattttgggtctgccactactcaatcccat
agcaaaagagtgaagttttctgatgctttactggctaaaaagacgaaagatgaaatgtca
tctgaaatggccagtaagtttgactggcttcttccctcgaaaattaaagatgcgaacgga
agaaggccaaacaaccccctttatgataagagaacactttatataccgcctgatgtttta
aagaagatgtcagcatctcagaagcagtattggagtgtcaaaagtcaatatatggatgtt
cttatattctttaaagtgggaaaattctacgagctttatgaactagatgctgaagttgga
cataaagaacttgattggaaaatgacgatgagcggtgttggtaaatgccggcaggttggt
ataactgagtatgcaatagatgatgctattgaaaagctgctagctcgggggtataaagtt
gggcgagtagagcaattggaaacatcagaacaagcaaaatcaagaggtgctactgcggtc
attcaaagaaaattagtacatgtgctcacaccatcaaccttaatgcatggtaatattggg
cctcaagctgtccatctttttgctctaaaagagggcgtaagaagtggtgatgatggtaca
attgcatatggatttgcctttgttgattgtgctgccttacagttttgggtcggatctgtc
attgatgatgcttcctgtgcagctttaggggctttattgatgcaggtgtcacctgcagaa
gttatatttgaaagtcaagggctatctaaagaagctcagaaagcccttaacaagtattca
ttgatgggttctgttgcctcaagaatgactccagcacagccagccacagattttattgat
tcttctgaagctcgaaactttattcaactaaaaggctactttaaaggttcatctaatgca
tgggactgtgcacttgatggcgtgcttcaccaagatatcgcattatgtgctcttggtgga
cttaccaatcatttgtccaggttaaagttagatgatgcattacggaatggaagtattcta
ccctatgaagtctacaaaggatgtcttagaatggatggacagacaatggccaatcttgaa
atattctctaataccgtagatggtggaatatcaggaacgctgtacaaatatcttgataac
tgcgtaacatcgtctggtaagcggcttttaaggaagtggctatgtcaaccactgaaagat
gctgaagaaattaatcagaggcttaatgttgtcgaagaactgatgggtcgtgcagagata
atggcacttattcctcaatatcttcggaaacttccagacttagagagatttcttggacaa
attaaggctaccttccagtcatctgcattactcttattgcccttgattggaaacaaaata
ctgaaacaaagagtgaaggcatttggatctcttgttaaaggtctacgtgctggaatgaat
ttattgatgctcttacagaaggaaaatgatgttttctctttgttactaaaaatattcacc
cttcctgtgataagtgggaatgacggccttgataaatttctcacccaatttgaagcagct
gtagacagcgattttccaaattatcaggcacatgaaatcaaggattcggatgctgaaaca
ctatcaattcttattgagttatttatggagagggctaatgagtggtttcagattattgtt
gctctaaactgcacagatgtgcttagatcatttgctatcactgcaaacttctcttgcatg
gccatgtgtaggccagttatagttcctcgatcaaactcatcatgttctaatcaagcatcc
aagggacccactcttcatatgaaaggattatgtcatccatatgcccttggagaaagcgga
ggaacacctgtttctaatgacttgtgtcttggagataatgacgctggatacaatccccgc
acaatgctgttgactgggccaaatatgggtggaaagtcaactattctccgtgctacctgc
ttagccgttgttcttgctcagcttggttgctatgttccttgtgaaatgtgcgttctgtca
cctgtggatattattttcacacgtcttggcgctactgatcgtataatgaccggcgaaagt
acctttctcatagaatgtacagaaacagcatccgttttgcaaaatgcaactcaagattct
cttgttattcttgacgaattgggccggggaacaagcacttttgatggatatgctattgct
tacgctgtatttcgtcatcttgttgagaaggtcaactgcaggttattattcgcaacccat
tatcacccgctgacaaaagagtttgccttacaccctcatgtaatgctacaacacatggcc
tgcactttcaaatccatatctaataactcagcatcaactaaccaggagttagtttttctc
taccgtctaaccaatggagcctgcccagagagctacggaatgcaagtggcattaatggcc
ggtatcccaaaaaaggtggtggaaactgccatgaagaaggcagaggttatgaaaacaaag
atacgagtgagttttcagtcaagcgagcggaggtcagagttttcgactttgcatgaggaa
tggttaaaaaatatttcagcaattacagaagtcgaagctcataagcttgaggatggtgat
gaagacgatgcgtttgatacattggtttgtttgcagcatgagattaaatgctcaaataaa
aaactgcggtaa
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