Erigeron canadensis (horseweed): 122600570
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Entry
122600570 CDS
T07610
Name
(RefSeq) WD repeat-containing protein 75
KO
K14552
NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
122600570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ecad03009
]
122600570
Ribosome biogenesis [BR:
ecad03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
122600570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR75_1st
Beta-prop_WDR75_2nd
WD40_Prp19
WD40_WDHD1_1st
WD40
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
WD40_CDC20-Fz
Beta-prop_IFT140_1st
WDR55
Beta-prop_EML
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_1st
Beta-prop_CAF1B_HIR1
EIF3I
WD40_MABP1-WDR62_2nd
PEP5_VPS11_N
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Motif
Other DBs
NCBI-GeneID:
122600570
NCBI-ProteinID:
XP_043629244
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Position
5:complement(33406474..33412019)
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AA seq
801 aa
AA seq
DB search
MIRGGKSFVSSQPAFSNDAKKLLVCTGNTVSIFSTATGLQVAELEGHTALVTSITVVPAT
TPASRILCYCWTTSLDGTIKYWDISIPELLKTTDIQLPVYSMVIPSLLAQQSENNEKSPD
LYAYISVANESSGQILKCNLSKSRLVRGVIVSESKKPVKLTISSSGKYFGFYEKRKIRIW
EVPAKDHKNVSHRKIKLLHSKNVSCLAFHPTDRIVAAGDVTGRILVWRGFGDRTFAGKNL
TNGKALKDEDENPGVRGDGDADSCTTWHWHSAEVKVLFFSSDGAYLYSGGKEGVLVVWQL
DTGKKKFLPRIGTPLLNYMNSPDPSLSSISCADNRIHILKMPSMEILKSISGIKLPSPVP
EMFKGACNDIVFDHTAGLIAVRTENYCIQFYSLFDDREISEVQVCERNHQPSDDVTMILN
LVALSFEGSVMCTVETRMAEEGIGGFVTLKFWERESQNNDFSLSTVIYEPHRDAGVSAIA
FHPTRGMAVSASYGGDFKVWVSNHDVQQNDKLIQRTRWACHAVGSYRKKPMTAAAFSTDG
SVLAVAAENVITVWDPDKNVLVAVIGSSRESIVNLSFIGESNFLVSASRGSNPQLSVWSM
SKLAVAWSYKLHTEAIACSEKEPLFAVLVLLPESSKTDVASLHKDTGAILVFNAGEPVPI
ASWFVTKAKGGAIAFIQRSISMDDSMDESVSGRILLAYVNGDHEYALFNPQDVETYERKA
RYADSVPGLEGTGHFGYASIYGELPEFKLKTFKASADPVKPSEKPWETIFDGPSHSLPPL
IKLCSTFMESLMEKRTSAMVE
NT seq
2406 nt
NT seq
+upstream
nt +downstream
nt
atgataagaggaggaaaaagctttgtgtcttcgcaacctgcattctcaaatgatgcaaag
aaactcttggtatgcaccggaaacaccgtttccattttcagcaccgcgactggtttacag
gtagcggaattagaaggtcatacagcacttgtgacatctataacagttgtaccagcaacc
acacctgcaagcaggattttatgctattgttggacgacttcactcgatggtacgatcaag
tactgggatatttctatacctgaattattgaagactacagatattcaacttccagtctat
tcaatggtgattccatccttgcttgctcagcagtccgagaataatgaaaagtcacctgat
ctttatgcttatatctcagtggcaaatgaatcaagtggccagatcctgaagtgtaatttg
tccaagtctcgcctggttcgtggagtgatagtatcagagagtaaaaaaccagttaaatta
acaatttcttcaagtggcaagtactttggcttttatgaaaagcgaaaaattcgtatatgg
gaagtacctgcaaaggatcacaagaatgtcagtcatcggaaaataaaactattacactcc
aagaatgtgagttgccttgcttttcatccaacagataggattgtagctgctggtgatgtg
actgggagaattttagtttggagaggttttggtgatagaacatttgctggtaagaattta
acaaatggtaaagcattgaaggatgaagatgaaaatccgggtgtcaggggtgatggtgat
gcagattcttgtactacatggcattggcattctgcggaggtcaaggtcttattcttttct
tcggatggagcgtatttgtattcaggtggaaaagaaggagttcttgtggtatggcagcta
gataccggaaagaagaaatttttacccagaatagggactccacttcttaattatatgaat
tctccggatccttctctttcatctatatcttgtgcagataaccggattcatattctaaaa
atgccatcaatggagattttgaagtccatttctggaatcaagcttccatctcctgtccca
gaaatgtttaaaggcgcatgtaacgatattgtgtttgaccatactgcgggattgattgct
gttcgtacggagaactactgtattcagttttatagcttatttgatgaccgtgagatatca
gaggttcaggtctgtgaaagaaatcatcagccaagtgatgatgtcacgatgattttaaat
ctagttgcactttcattcgaaggctctgtgatgtgtaccgttgaaactagaatggctgaa
gaaggaataggcggttttgtaacactcaagttttgggaacgcgagtcacagaacaatgac
tttagcttgtccactgttatatatgagccccacagggatgccggtgtatctgcaattgct
ttccatccaactcgtggcatggccgtcagtgcttcttatggtggtgattttaaggtttgg
gttagcaatcatgatgttcaacagaatgataaattgattcagaggactagatgggcatgt
catgctgttggttcatacaggaaaaaacctatgacagctgccgcattttccactgatggt
tctgtgttggcagtagctgcagaaaatgttatcactgtgtgggacccagataaaaatgtt
cttgtggctgtgattgggtcttcccgtgagtcaatagttaatttatcgtttattggagag
tccaattttcttgtatctgcatctcgaggttcaaatccacagctttcagtttggagtatg
tccaagctggcggttgcctggtcatataagcttcacacagaagctattgcatgttcagaa
aaagaacctctctttgctgttcttgttcttcttcccgagtcatctaaaactgatgtcgcc
tcattacacaaggacactggggctatacttgtatttaatgcaggagaacctgttcctatt
gcttcatggtttgtgacgaaggcaaagggaggggcgattgcttttattcaaagaagtata
tccatggatgacagcatggatgaaagtgtatcaggtcgtattttgcttgcatatgtaaat
ggtgatcatgagtatgctcttttcaatccacaagatgttgagacatatgaaaggaaagct
aggtacgcagatagtgtacctggtctggaagggacagggcattttgggtatgcatctata
tatggggagctacctgagttcaagttgaaaacatttaaagcatctgccgaccctgtaaag
ccttcagaaaagccatgggagaccatttttgatggaccatcacatagtctacctcctctc
attaagctctgttctacttttatggaatcactgatggagaagcgaactagtgctatggta
gagtag
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