Erigeron canadensis (horseweed): 122600574
Help
Entry
122600574 CDS
T07610
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122600574
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecad03021
]
122600574
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122600574
Transcription machinery [BR:
ecad03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122600574
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
122600574
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
zf-C2H2_4
zf-C2H2
Motif
Other DBs
NCBI-GeneID:
122600574
NCBI-ProteinID:
XP_043629251
LinkDB
All DBs
Position
1:54252073..54256535
Genome browser
AA seq
856 aa
AA seq
DB search
MEMDNPRGRSFDNRSARNPKKPRLITEETPAVIRSNNNSLNGNGRPPVAQRQPVVGFRQD
AAVDRDGEGGYEPQSLLQIKQQQYQELVSQYRAALAELTFNSKPIITNLTIIAGENVQAA
KAIATTICNNIVEVPSDQKLPSLYLLDSIVKNIGRDYIRHFSTKLPEVFCKAYRQVDSTI
HSGMRHLFGTWKGVFPPQTLQSIEKELGFQSVGNGSTSGLTTSRPDSQPQRPAGSIHVNP
KYLEARQKLQQSTREKVAASDITTNLIKSPEDVVRLNRTAGINPQRARADPRLKFHQAQR
DAESDLTNENSGASYNSFDFGPDISSERVTEHSTEIIPRLKRNSFDVKQGLPNYLGPRTA
VPDARLQSVSKGGAEISRSWKNSEEEEYMWDDVSSKRDPRLYFEPAGPVTKTTTPSSQPP
PRQPPHSQYQSGRLLRELADQGSIDVDGKTARFRTQINTGLSSQSHQDSLLMKPQNLQSG
NPRNSQLNNLQPLSPQLPVKRVRYLPPYQPESVSEPVSASPSVSSSLAHPKSLVTDIPGP
PNSSSLLAAVSSIFGNKPVSSTLSSTVTNPVSNPVSNPVSSLLSTLVAKGLISASHDDSK
IQSQSDDSKKQSQSDDSKKQSQSGDSKKQSQSNDTKKQSQSDFTVSSEEILPIVVSPVIS
TSSTSSELSPSKRVSKSSVTIPKPINEEIKSLIGFQFKADVIRQFHPIVISELIDELPHQ
CSICGLRFKLEERFNKHMEWHILRNSESDISRRWFPSCEDWVNGGSSNESTLVIDGEQMV
TADESQFVCVLCGEMFDDYYSSERNKWMFKGTTYLDITNGNAASINNGVIVHVNCISEHS
LSDLGIANEVKVENGL
NT seq
2571 nt
NT seq
+upstream
nt +downstream
nt
atggagatggacaatcctcgaggaagatcgttcgataatagatcggctagaaaccctaag
aaacctcgattgataacggaggaaacgccggccgtgattcgaagtaataataatagtttg
aatgggaacggcaggccgccggtggctcagcggcagcctgtggtagggtttagacaggat
gcggcggtggacagagacggagagggaggttacgagccgcagtcgttgttgcagatcaaa
caacagcagtatcaagagttagtgagccagtatagggcagctctagctgagttgactttt
aactcgaaaccgattataactaacttgactatcattgctggagagaatgtgcaggctgct
aaagctattgctactactatctgcaataatattgttgaggttcctagtgatcaaaagttg
ccatcactatatcttctagacagtattgtgaaaaacattggacgtgattacatcagacac
ttttccaccaagctccctgaggtattctgcaaagcctataggcaggttgattctacaata
cattcgggtatgcgacatctatttgggacatggaaaggagtatttccccctcaaacactt
caatcgatagagaaagaactcggtttccagtcagttgggaatgggtccacttcagggttg
accacttctagacctgattcacagcctcagcgtcctgctggcagtatccatgtgaatcct
aagtatttggaggccagacagaaactccagcagtcaaccagggaaaaagttgcagccagt
gacataaccacgaacttgattaaatcacctgaagatgtcgtgagactgaatcgaacagct
ggcataaatcctcagagggcacgtgctgatcctcggcttaaatttcatcaggcacagaga
gatgcagagagtgatcttactaacgagaacagtggtgcatcatataacagtttcgatttt
ggacctgatatatcaagtgaaagggtgacggagcatagtacagagataatacccaggctg
aaaagaaattcttttgatgtaaagcaaggactgccaaattatctgggtcctagaactgca
gttcctgatgcaagattacagtctgtgagtaaaggaggtgctgaaataagtaggagctgg
aagaactcagaggaagaggagtacatgtgggatgacgtgagctccaagagagaccctagg
ttgtattttgagcctgcaggacctgtaactaaaaccacaacaccatctagtcagccacca
cctcgccagcctcctcactcacagtaccagtctggtaggttactgcgtgagttagccgat
caaggttcaatagatgtggatggtaaaacagctcgattccgaactcaaataaacactggt
ctttctagtcaatcgcatcaagattctctcctcatgaaacctcagaatttgcaatcgggc
aaccctcgaaactcacaacttaacaatttgcagccactctcacctcagttaccagtgaaa
cgtgttcggtatctgccaccttatcaacctgaatcagtatccgagcccgtttctgcaagt
ccttctgttagctcctcactggcccacccaaaatctttggttacagatataccaggaccg
ccaaactccagtagtttgttagctgctgttagtagcatatttggtaacaaacctgtttca
tcaacacttagttcaacagtcacgaatcctgtgtcaaatcccgtgtcaaaccctgtgtcc
agtctattgagtacattggttgctaaaggcttaatttctgcatctcatgatgattcaaag
atacagagccaaagtgatgattcgaagaaacaaagccaaagtgatgattcaaagaaacaa
agccaaagtggtgattcaaagaaacagagccaaagtaatgatacaaagaaacagagtcaa
agtgatttcactgtatcgtcagaagaaattcttccaattgtagtttctcctgtgatatct
acttcatctaccagcagtgagctatctccctccaagcgtgtctctaaaagttctgtcaca
atacctaagcctatcaatgaagaaattaagagtcttattggtttccaatttaaggctgat
gttattaggcaatttcatcctattgtaattagtgagctcattgatgaacttccacatcaa
tgtagcatttgtggtttaagatttaaacttgaagaacgattcaataagcatatggaatgg
cacatattgagaaattctgaatcagacatatcaaggaggtggttcccaagttgtgaggac
tgggttaatggtgggtcaagtaatgagagcacattagtgatcgatggcgagcaaatggtt
actgcagatgaaagtcagtttgtatgcgttttatgtggcgaaatgtttgatgattattac
agttcagaaaggaataaatggatgtttaagggaaccacataccttgacatcacaaatggc
aatgccgcaagtatcaacaatggtgttatcgtgcatgtaaattgtatatcagaacattca
ctttctgatcttggcatagccaatgaggtgaaggtggaaaatgggctatga
DBGET
integrated database retrieval system
