Erigeron canadensis (horseweed): 122600823
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Entry
122600823 CDS
T07610
Name
(RefSeq) protein transport protein SEC16B homolog
KO
K20353
COPII coat assembly protein SEC16
Organism
ecad
Erigeron canadensis (horseweed)
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ecad04131
]
122600823
Membrane trafficking [BR:
ecad04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
122600823
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Sec16
Sec16
Motif
Other DBs
NCBI-GeneID:
122600823
NCBI-ProteinID:
XP_043629529
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All DBs
Position
5:complement(41157469..41166528)
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AA seq
1281 aa
AA seq
DB search
MEDTTDEDFFDKLVDDVDVDVPESSNVVNHSIEAKPNLVKELGKVGVGGEEKEGNKGSNT
VDDLIDDRVGTGKLLVSGDVFAFENVNRESTAGWEHGTASCSGVKEVQWSAFNAEPLDNS
GNVFGSDSDFFTEFDGNLVDPAGEADNFVNSVVNLVSNSSHGGSVIDYSHQFQEGQGYTT
SMRQGTDGQDVDSSQYWENPYPGWNSWKYDANTGQWYHDDGYNAASNAQMVDNSICASDW
AVSNVNTEVTYSQQTGPSFVGEKLTNEGLMSWNPNSQMSHTNNSSSNWCQISQGNSNVYP
PHFYFDPKYPGWYYDLNIQEWRSLDTYNSQLTHHNSLTASNSYYGNEQLDKWSGSDYNWN
GISKQGCQPDTLKQLQSYSTNFHGDNNINQEQSYDYAGTVAYQSSQVRTMRRSSVGQPAH
ALVTFGFGGKLIVMTETSALIKPSYGGQDSSSGLISIFNLAEIVTGVGDASSSRTGLHNY
FHTLCHQSFPGSLANGNVGKELNKWLDERITHPTDTDYKQDQVLRLLLSLLKIALQHYGK
LRSPFGTDTTSKENDAPDVAVAKLFASAKRNSAAYGDYGGFANCLQYLPSERQIRETAAE
VQTLLVSGRKMEALHCAQEGQIWGIALVLAAQLGDQFYADTVSKMARCQLVAGSPLRTLC
LLIAGQPADVFLTDSVANDATAAAVNMFQQPAQAQLGANAMLDDWEENLAIITANRTRDD
ELVLIHLGDCLWKETSNILAAHICYLVAEANFEPYSDSARLCLIGADHMKYPRTYASPEA
IQRTEVYEYSKLLGNSQFTLLPFQPYKLIYASMLAEVGKLSDSLKYCQLILRSLKTGRSP
EVETWRHLVTSLEDRIKTHQQGGFSTNLAPKLVGKILNLFDTNRNLFDTNRNNRPPLAPS
NSASVAQNDHYHQTTPPRVSTSQSTMAMSSLVPSASMEPISQKSAEGNSRRIMHNRSVSE
PDFGRSPRQNQVDSTKENPPDSQSKVSTSRFRRFGFGSQLFQKTVGLVLKPRQDKQAKLG
ETNKFYYDDKLKRWVEEGVDPQAEEASLPPPPTMATFQNGTPDHGSKGDAKSEGTLNNGV
AEFSSSKSSGIPPIPATSNQFSARGRMGVRARYVDTFNQGGGNPTKLFQSASATSVKPIA
KSNPKFFVPMAVTSAEQPADTLRENIQQQTTTADDNYSPTSVHNPFQPPSYQSSMQRFAS
MNDISKGGVPSFTSASSSPHSRRTASWGGSTDECFSVSSSGMKPRGGTLGMPQNSFIPSE
PAVDQTTNGDGFCDDLHEVEF
NT seq
3846 nt
NT seq
+upstream
nt +downstream
nt
atggaggatactactgatgaagattttttcgataaattggtcgatgatgtcgatgttgat
gtaccggaatcaagtaatgtggtaaaccattctattgaggctaaacctaatttagttaaa
gaattggggaaagtaggtgtaggtggtgaagagaaagaaggtaataaaggttctaatacg
gtagatgatttgattgacgatagagtggggaccggtaagctgttagtgtcgggtgatgtg
ttcgcgtttgaaaatgtgaatcgagaatcgacagcaggttgggagcatgggactgccagt
tgttcgggtgttaaggaggtgcagtggagtgcttttaatgctgagccattagataatagt
ggtaacgtttttggatcagactcggatttttttactgaatttgatggtaatttggttgac
ccagctggggaagcggataactttgttaacagtgtagtgaatttggtgagtaattcgtcg
catggtgggagtgtaatagattattcgcatcagtttcaagagggtcaaggttatacgaca
tctatgagacaaggtacggatggtcaagatgttgatagtagtcagtattgggagaatcca
tacccaggatggaactcatggaagtatgatgcaaatacgggacaatggtatcatgacgat
ggttataatgcagcatcaaatgcgcaaatggtggataattcaatttgtgcatctgattgg
gctgtttccaatgtgaatacagaggttacttattcacagcaaactggtccatcttttgta
ggagaaaaattaacaaatgaaggtttaatgagttggaatccaaactcacaaatgagtcac
actaacaacagttcatcaaactggtgtcaaatatcacaaggaaatagtaacgtatatcct
ccacatttttattttgatcctaaatatcccggttggtattatgacctgaatatccaagaa
tggcgttctttggatacatataattctcaactaacccatcacaatagtcttacagcaagt
aatagttattatggaaatgaacagttggataagtggtctggatcagactataactggaat
gggattagtaaacaaggttgccaacctgatacacttaaacaactgcaatcttatagcact
aattttcacggtgataataatattaatcaagagcagtcttatgattatgcgggaacggtt
gcttatcaatctagtcaggttcgtactatgagaagatcatctgttggccaaccagctcat
gcattggttacattcgggtttggtgggaagctaattgtcatgacggaaacaagtgctctc
ataaagccatcctatggaggccaggattctagctctgggttgatatccatttttaatctg
gcggaaattgtcaccggagttggtgatgcgtcaagcagcaggacaggtttacataattac
tttcatactctttgccaccagtcgtttccaggatcactggctaatggaaatgttggtaaa
gagttgaataaatggcttgatgagaggatcacacaccctactgacactgactacaagcaa
gaccaagttttaaggctgctcctttctttgctcaaaatagctttacagcactatgggaaa
ttgcgttctccttttggcactgacaccacatcaaaggaaaatgacgcacctgatgtagct
gttgctaaactttttgcatctgcaaagaggaacagtgcagcgtatggtgattatggtggt
tttgccaactgcttgcagtacttaccttcagaaagacaaattagggaaacagctgccgag
gtccaaactctgctggtttctggtagaaagatggaagcccttcattgtgcacaagagggt
caaatttgggggattgcccttgttcttgcagcacaacttggtgatcagttctatgcggat
actgttagtaagatggctcgttgccagcttgtagcaggttcacctttgcggacattatgc
ttacttattgctggtcagcctgcggatgtgtttctaactgactctgtagcaaatgatgcc
actgctgctgctgtaaatatgtttcagcagcctgcacaggctcagcttggtgccaatgct
atgctcgatgactgggaagagaatctagctattattactgctaacaggaccagggatgat
gaactagtgcttattcatctcggagactgtttatggaaggaaacaagtaatattcttgcg
gcacacatttgctacttggttgcagaagcaaactttgagccatattcagatagtgctaga
ctgtgtctcattggtgcagaccacatgaaatatccccgcacatatgcctcaccagaagcc
attcagaggacagaggtgtatgaatattcaaaacttctggggaactctcagtttacattg
ctaccattccaaccttataagcttatatatgccagtatgttggctgaagtaggaaaacta
tctgactcattgaagtattgtcaattgatattaagatcgttgaaaactggtcgctcccct
gaagtagaaacatggagacatctggttacatccttagaggataggataaaaactcaccaa
cagggtggtttttctacaaatttagctcctaagctagttggaaaaattctcaaccttttt
gacactaaccggaacctttttgacactaatcggaataatagaccaccactcgccccatca
aattctgcttctgttgcacaaaatgaccattatcatcaaaccacacctccccgggtatct
actagtcagtcaacaatggcaatgtcttcattggttccatctgcatctatggagcccatc
agccagaagtctgcagagggaaacagtagaagaatcatgcataacagaagcgtttccgag
cctgattttggtcgatctcctaggcagaatcaggtggattctacaaaggagaaccctcca
gattcacaaagtaaagtatctacttcacgttttagacgttttggttttggctcacagctc
ttccaaaagacagttggtctagttctaaaacctcgccaggacaaacaggcaaaattgggg
gagacaaataaattttattatgatgataaacttaaaagatgggtagaggaaggtgttgat
ccacaagcagaggaggcatcacttcctccaccacccacaatggcaacttttcagaatgga
acaccggatcatggatcaaaaggtgatgcaaagagtgaagggactcttaacaatggagtt
gcagaattttcaagctcgaaaagttcaggaattccaccaattccagccacctcaaaccaa
ttctcagcgcgcggaaggatgggggttcgtgcaaggtatgttgatactttcaaccaaggt
ggggggaacccaaccaagttgttccagtcggcatctgcaacttccgtcaaaccaatcgca
aaatcaaatccaaaattcttcgttccaatggccgtaacctcggctgaacaaccggctgac
actctcagagaaaacatacaacaacaaactacaactgctgatgataattattcaccaact
tcggtgcataacccgttccaacctccttcatatcaatcttccatgcaaagatttgcaagc
atgaatgatatctcaaaagggggagtaccatccttcacgagtgcatccagctcacctcac
tcaagaagaacagcatcatggggtggaagtactgatgaatgtttttctgtttctagtagc
ggaatgaaaccaagaggagggacgttaggtatgcctcaaaattcgttcatcccaagtgaa
ccagcggttgatcaaacgaccaatggtgatggtttttgcgacgatcttcatgaggttgaa
ttctaa
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