Erigeron canadensis (horseweed): 122600974
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Entry
122600974 CDS
T07610
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
122600974
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecad03021
]
122600974
03036 Chromosome and associated proteins [BR:
ecad03036
]
122600974
Transcription machinery [BR:
ecad03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
122600974
Coactivators
SAGA/TFTC/STAGA complex
122600974
Chromosome and associated proteins [BR:
ecad03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
122600974
STAGA complex
122600974
TFTC complex
122600974
SAGA complex
122600974
SLIK complex
122600974
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
EIF3I
WDR55
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
ANAPC4_WD40
Beta-prop_EML
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
Beta-prop_IFT140_1st
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_WDR19_1st
Beta-prop_WDR75_1st
Beta-prop_SPT8
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_WDR35_TULP_N
Beta-prop_HPS5
Beta-prop_Nup120_160
WD40_like
Beta-prop_DCAF12
Nucleoporin_N
WD_LRWD1
Beta-prop_NUP159_NUP214
LisH
LisH_PAC1
RAB3GAP2_N
PALB2_WD40
Motif
Other DBs
NCBI-GeneID:
122600974
NCBI-ProteinID:
XP_043629689
LinkDB
All DBs
Position
5:37467457..37474843
Genome browser
AA seq
667 aa
AA seq
DB search
MEDLDKAVVTYLKKKGFTQTEQIFQQEQQTINNNNATDASLLDPDLTKQILTFSQSENIP
ALYQDGYSKLRAWTYGSLDLYKHELLRVLYPVFIHCFMDLIAKGHLQEARAFFSSFREDH
EMMHSRDLIKLEGVLSPSHLEEMEFAHSLRQSKVSIKICQYSYEILLQYLHKTQLITMLG
IINEHIDFQVSPGQPSSVSDDAEAFSLVGSGQDAANLINQKEIHWGLLEDSLEDRLDKAG
GLLSDSEKADGDAKEVELDENKKKSTDGGKQGGPLKKLKKDKVAGGAGKGARGEGDKAAA
APRVKPELALPTISADVENSILEDLRNRVQLSSSTLPSVCFYTFINTHNGLNCTSISHDG
SLVAGGFSDSSLKVWDVAKLGRMGSSMQNEIDPALSENNVGSNGGKRPYTLYQGHSGPVY
SASFSPMGDFLLSSSSDSTIRLWSTKFNANVVCYKGHNYPVWDVQFSPVGHYFASASHDR
TARVWSMDRVQPLRILAGHLSDVDCVQWHMNCNYLATGSSDKTIRMWDVQTGNCMRIFIG
HRSSILSLAMSPDGRYLASGDEDGTIMMWDVSNGRCITPLVGHTSCVWSLAFSCEGSLLA
SGSADSTVKLWDVNASAKQPKTEESKSGNTNRLRSLKTLPTKSTPVYSLRFSRRNLLFAA
GALSANV
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggaagatttggataaagcggttgttacatatttaaagaaaaagggatttacacaaact
gaacagatttttcagcaagaacagcaaacgattaacaacaacaatgctactgatgcttct
cttttggatccagatcttactaaacaaatcctcaccttttcccagtcagaaaatatccct
gcactgtaccaggatgggtacagcaagttgagggcatggacttatggctcactagatctg
tacaagcatgaattgcttcgtgttctgtatccagtatttattcactgtttcatggatctc
atagcaaaaggccatcttcaagaagctcgagcatttttcagtagtttccgtgaagatcat
gagatgatgcattcacgtgacctcataaaattggaaggtgttctttctccgtctcatctg
gaggagatggagtttgctcactctttaaggcagagcaaagtgagcataaagatatgccag
tattcttacgagattcttctgcaatatctacacaagacacagttgattacaatgctaggt
attatcaatgagcatattgattttcaagtttctccgggacagcctagctcagtttctgat
gatgctgaagccttttcacttgttggtagtggtcaagatgctgctaatttaataaatcag
aaagaaatacattgggggttgcttgaggattcgttagaagatcggcttgataaagcagga
gggttgctctcagattcagagaaggcagacggagatgccaaggaagtggagttggatgag
aataagaagaaatctacagatggtggaaagcaaggtgggccactcaagaagttaaagaag
gataaagttgctggtggtgcagggaaaggtgctcgaggggagggtgacaaggcagctgct
gcaccacgtgtcaaacctgagcttgcattaccaacaatatcagcagacgttgagaattca
attctggaagaccttcgtaatcgtgtacaattgagcagttcaacacttccttcagtttgt
ttctacacatttatcaacacacataacggattaaactgtacatctatatcccatgatgga
tcattagttgctggaggattctcagattcatctctcaaggtttgggatgttgcaaaactt
gggcgtatgggtagttctatgcagaatgaaattgatccggctctaagtgaaaacaatgtt
ggatcaaatggtggaaaaagaccttacacattgtatcagggtcattctggacctgtttat
tccgcttcatttagtccaatgggggattttcttctatcatcttcatcagattcaacaata
agattatggagcacaaagtttaatgcaaacgttgtctgctacaagggtcacaattaccct
gtatgggatgtgcagtttagtccagttgggcattattttgcaagtgcatctcatgacaga
acagcaagggtttggtcaatggatagagtacagcccttaaggatactagcaggacatcta
tctgatgttgattgtgtacagtggcatatgaactgcaattaccttgcaactggatccagt
gacaagactatccgcatgtgggatgtgcaaactgggaattgcatgcggattttcattggt
catagaagttcaatcttatcattggcgatgtcacctgatggtagatatctggcatctggt
gatgaggatggaaccataatgatgtgggatgtttcgaatggtcgttgcatcactcctctc
gtgggccatacatcctgtgtctggtcacttgctttcagctgtgagggctcgcttcttgca
tctggttccgctgattcaactgtcaagttatgggatgtaaacgcaagcgcaaaacagcca
aaaacagaagaaagtaaaagtggtaatacaaatagactcagatcgctgaagactctaccg
accaagtccaccccagtttattctttacggttttcgcgaaggaatcttctttttgctgct
ggagcactttcggcaaatgtgtaa
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