Erigeron canadensis (horseweed): 122601159
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Entry
122601159 CDS
T07610
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122601159
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122601159
03041 Spliceosome [BR:
ecad03041
]
122601159
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
122601159
Spliceosome [BR:
ecad03041
]
Complex B
Other components
Prp19-related factors
122601159
Complex C
122601159
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_8
TPR_15
NRDE-2
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
122601159
NCBI-ProteinID:
XP_043629863
LinkDB
All DBs
Position
5:9733895..9736460
Genome browser
AA seq
816 aa
AA seq
DB search
MSSYESELLRNPYSLKLWCRYLTAQTEPSFEKRSVVYERALEALPNSYKLWHAYLQEHLE
FVRNLPVSDPQYQILNNTFERALVTMNKFPKIWIMYLTSLTKQKLVTKTRKAFDRALRAL
PVTQHEKIWETFLVFVSQKGVPIETCLRVYKRYLKYDKSHVEDLIEFLLNSELWQEAAER
FVSVLNDDRFSSIKRKTKHRMWLEFCDLIVKNASEIFGLNVDAIIREGIRKFSDEVGRLW
TSLADFYIRRKLFEKARDVFEEGMTTVVTVRDFSLIFDAYLQFEESLLALKMDEDEYDDG
DEEEEEEDDRLNVGKLDEKIKRFWLSDEKDVDLRLTRLERLMDRRGELANSVVLRQNPHN
VEQWHRRVKIFEGNPSKQILTYTEAVRTIDPMKAVGKPHTLWVAFAKSYETQNDVANAQV
IFEKAVQVNYKDVDSLVSVWCEYAEMELRHKNFKGALELMRQATAEPSVEVKRRVAADGN
EPVQIKLHTSVRLWTFYVDLEESLGTLESTRSVYERILDLRIATPQIIINYAMLLEDNKY
FEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKSKLERCRELFERAIEAAPSEAVR
PLYVQYAKLEEDYGLAKRAMRIYDQATKVVPANEKLSMYEIYIARAAEVFGVPKIREIFK
QAIVSDGLREKDTIRMCIRYAELETRLGEIYRAREIYVQSSQLADPPSDGDFWKKWHDFE
VQHGNEDTFRNMLCIKRSASVAKNLGFVSVGVQESQKESGILQNQEEIDLPEDVLDEVFG
GCNIRKRDDEAENENGDGETGLGALERMRKRIRQGN
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcatacgagtcagagctgctccgaaacccttacagtcttaaactatggtgtcgt
tacttaaccgcccaaaccgaaccgtctttcgagaaacgctccgtcgtttacgaacgagca
ctcgaagcattaccaaacagttacaaactttggcacgcatatctccaagaacatctcgaa
ttcgtacgtaatttgcccgtttcggatccacagtaccagattttaaacaacacattcgaa
cgtgcgttagttactatgaataaattcccgaaaatctggattatgtatttgactagtttg
actaaacaaaagttagttactaaaacgcgtaaagcgtttgatagggcgttacgtgcgttg
cccgttactcaacacgaaaaaatttgggagacgtttttggttttcgttagtcagaaaggg
gtcccgatcgagacgtgtttgagggtttataaacggtatttgaagtacgataaaagtcat
gttgaggatttgattgagtttttgttgaattctgagttgtggcaagaggctgcggagaga
ttcgtaagtgttttgaatgacgataggtttagttcgattaaaaggaagacgaaacataga
atgtggttggagttttgtgatttgattgtaaaaaacgcgagtgagatttttgggttgaac
gttgatgcgattattagagaagggattaggaagtttagtgacgaggtgggtcggttgtgg
acttcgttggcggatttttatatacggaggaagttgtttgagaaggctagagatgttttt
gaagaagggatgacgacggttgttactgttagggattttagtttgatttttgatgcgtat
ttgcagtttgaagaaagtctgcttgctttgaagatggacgaggatgagtatgatgacgga
gatgaggaggaagaggaagaagatgatcggcttaacgtggggaagttggatgagaagatt
aaacggttttggttatctgacgaaaaagatgttgatttgaggctaacgagactggagcgt
cttatggatagaagaggggaactggctaatagtgttgttctgcgtcaaaatcctcataat
gttgaacaatggcataggagggttaaaatctttgaagggaatccaagcaagcagattttg
acttatacagaagctgtacgaacaattgacccaatgaaagcagttggcaaaccacatacc
ttatgggttgcgtttgctaaatcgtatgaaacacaaaacgacgttgctaatgcacaggtg
atatttgaaaaggctgtgcaagttaactataaagatgtggatagtcttgttagtgtgtgg
tgtgaatatgcagaaatggagcttagacacaaaaatttcaagggagcgttggaactaatg
aggcaggctacagctgagccgtcggttgaggttaaacgcagagtggctgctgatggcaat
gaaccggtacaaataaagttgcacacgtcggtaaggctttggactttttatgtggattta
gaagaaagtttaggcactttggaatccacccgttctgtatatgaaaggatcttggatcta
cgaattgctacaccgcagattattataaactacgcaatgttgttagaggataacaagtat
tttgaggatgctttcaaggtctacgaaaggggggtgaagatcttcaaatatccgcatgtg
aaagacatttgggttacttatctctcaaaatttgtgaaacgatacggaaagtccaaactt
gaaaggtgtagagagctatttgagcgtgccattgaagcagccccttctgaagccgtaagg
cccttgtatgttcaatatgctaagttggaagaggattacggtctagctaaacgagcaatg
agaatttatgatcaagcaacaaaagttgtcccagcgaatgagaagttgagcatgtatgaa
atttacatagcacgtgcagctgaagtttttggggttcctaaaattcgggagatctttaaa
caggccattgtttctgatggccttcgtgagaaggataccataaggatgtgcatcaggtat
gccgagcttgagacgagacttggagaaatttaccgtgcacgtgaaatatatgttcaatca
tctcagcttgcagatccaccctctgatggtgatttttggaagaagtggcatgattttgaa
gtacaacatggtaacgaggacactttccgaaacatgctttgtattaagaggagtgcttct
gttgctaaaaatcttggatttgtaagtgttggtgttcaagaatcacaaaaagaatcagga
atactgcaaaaccaagaagagatcgatcttccagaagatgtacttgatgaagtatttggt
ggatgtaatatcagaaaaagggacgatgaagcagaaaatgaaaatggagatggtgagacc
ggtcttggtgcacttgaaagaatgcgtaaaaggatacgtcaaggcaactaa
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