Erigeron canadensis (horseweed): 122601232
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Entry
122601232 CDS
T07610
Name
(RefSeq) probable pectate lyase 8
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad00040
Pentose and glucuronate interconversions
ecad01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
122601232
Enzymes [BR:
ecad01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
122601232
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Peroxin-22
Motif
Other DBs
NCBI-GeneID:
122601232
NCBI-ProteinID:
XP_043629929
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Position
1:60184554..60189422
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AA seq
444 aa
AA seq
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MVMAAQVLISVYCLVLLISVSSSSSSTNNPPATSTNEMKVLQSSNYSSMAARIKEIEKLN
EYAVQDPEEVVAMVEMSMRNSTQRRKLGYFSCGTGNPIDDCWRCDPNWRRNRKKLADCGI
GFGRNAIGGRDGRYYVVTDPRDDDPVNPRPGTLRHAVIQEAPLWIVFKRDMVIQLKQELI
MNSFKTIDARGVNVHIANGACLTIQFVTNIIIHGLHIHDCKPTGNALVRSSPSHYGWRTM
ADGDAISIFGSSHIWVDHNSLSNCADGLVDAVMGSTAITISNNYFTHHNEVILLGHSDTY
FRDKLMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNR
YLAPVNPFAKEVTKRVDTDGSQWHGWNWRSEGDLLLNGAYFIPSGAGAAASYARASSLGA
KSSTLVGTITAGAGVLNCRKGGRC
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atggtaatggctgctcaggtcctaatctctgtctattgtttggttttactcatctctgtt
tcttcttcttcttcttccacaaacaacccccctgccaccagcacaaatgagatgaaagtg
ttgcagagctccaattactcatcaatggctgccagaattaaggagattgaaaagttgaat
gaatatgcagtgcaagaccccgaggaagttgttgccatggttgaaatgagtatgagaaac
agcacacagaggagaaaactcggatatttttcatgtggtactggtaatccaattgatgac
tgttggcgctgtgacccaaactggagacgcaatcgcaagaagttggctgactgtggcatt
ggcttcggtcggaatgcaattggaggccgtgatggaaggtattacgttgtcactgacccc
agagatgatgaccctgttaacccgcggcctggcaccctacgccatgctgttattcaagaa
gcgccattgtggattgtctttaaacgtgacatggtcattcaactgaagcaagaacttatc
atgaatagtttcaagaccattgatgctcgtggggtcaacgtacatattgctaatggagct
tgccttacaatccagtttgttaccaatattattatccatggtttacacatccatgactgt
aaacctactgggaatgccttggtgagaagctctccttcccattatggttggagaacaatg
gctgatggggatgctatttctattttcgggtcaagccatatatgggttgatcataactct
ctatctaattgtgctgatggacttgtggatgctgtcatgggttcaactgctatcactatt
tctaacaattacttcacccatcacaacgaggtgatattgctgggacatagtgacacttat
tttagagacaagctgatgcaggtgactattgcctacaatcactttggagaaggtcttatc
caaagaatgccaagatgcagacatgggtatttccatgtggtgaacaatgactacacccat
tgggagatgtatgccattggtggaagtgcaaacccaaccatcaacagccaaggcaacaga
tatcttgcccctgtgaatccttttgcaaaagaggttaccaaaagagtggacacagatgga
agccagtggcatggatggaactggagatcagagggtgacctacttcttaatggggcttat
ttcatcccatctggagcaggagccgctgccagctatgcacgggcctcaagtttgggtgcc
aagtcctctacactggttggtaccatcactgctggtgctggagttcttaactgccgcaaa
ggtggtcggtgctag
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