Erigeron canadensis (horseweed): 122601358
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Entry
122601358 CDS
T07610
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1
KO
K15172
transcription elongation factor SPT5
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
122601358
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecad03021
]
122601358
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122601358
Transcription machinery [BR:
ecad03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
122601358
RNA polymerase I system
122601358
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
122601358
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW1_SPT5
KOW4_SPT5
KOW6_SPT51-2
Spt5-NGN
KOW2_Spt5
KOW7_SPT5
KOW5_SPT5
KOW
KOWx_SPT5
Spt5_N
GPKOW_C
SH3_KIN17_C
DUF4438
ProQ_C
Effector_1
Motif
Other DBs
NCBI-GeneID:
122601358
NCBI-ProteinID:
XP_043630059
LinkDB
All DBs
Position
5:23067664..23074116
Genome browser
AA seq
988 aa
AA seq
DB search
MAGNKYDDDEDRSRRKRSRALAFIDYAAEEGSDDEEEYEDENVRRVKKPSKKKKKKPKNE
SEDDESDDEENSQDENDDGFIVHDSVDPNDEEDAREMYHRPLLPNEDDQEDPADIQRRLK
EKYGDAVYYDDDDDYDDDDDATEVEQQALLPSVRDPKLWMVKCAIGHEREVATCLMKKCI
DSGSEMQIKSAIALDYLKNYIYIEADKVAHVKEACKGMRSIYPGGKILLVPIKEMTDVLS
AESKTVDLPRDTWVRMTAGTYKGDLARVVEADNMRRKVTVKLIPRIDLQALVNRLDGREA
PKMKIFTPPPRFINFDEARAMHIPVEHRWVQRTGDYFEIINGMKFKDGLLYKTVSIKSIS
TQSIQPSLDELEKFRQPDEDGDGDVSWSTLLTKRQKGHFMKGDRVIVIKGELKKLKGWVE
KVEEGTVHIKSDEDGLPKTLSVSERELCKYFEVGNHVKVVSGAQKGVTGMVVTVEGHLVN
IVSNTTKEVLRVFSDYVVESSEITSGVTKVGEFELHDLVQLDNVNFGVIIRVDSEAFQVL
KGAVDRAYVQIVRLRDIKYKIDRKMSAHDHYKNTVSVKDVVKVLEGPCKGKQGLVEHIYK
GMLFIYDRHHLEHAGFICAKAQSCVLVGGSRANGDRNGNLLTSRPAHLSTPTHFPNYPGR
GGPPLPGGRHRGGGRGKDSLVGTTIKIRMGAYKGYKGRVLDVSGTSVQVELESQMKVVRV
ERNQIYDVKATTPYGETHRYGYDGSETPMHPSRTPLHPYMTPMRDPGATPIHNGMRTPMR
DRAWNPYAPMSPSRDSWEEGNPGSWGTSPHSRAYEAPTPGTPRDTTSAYANAPSPYLPST
PGRQLPMTPGTPRDQPMTPGGGSLDMMSPAVGRHIDGSLFLPDILVNVRRPAKDAVIGVI
REVLLDGVCRVALGSTGYGNVITAMPNEIEVLVPRRLDKVKIINGAGRGSTGKLIGIDGT
EGIVKMDDSHDPINPKILDMDILAKLAT
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atggcgggaaacaaatatgatgacgatgaggatcgcagcaggcgtaagagaagtagagcg
ttggcttttatcgactacgctgccgaagaaggcagcgacgatgaagaagaatacgaggat
gagaatgttcgcagagttaagaaaccgtcaaaaaagaagaagaagaagccaaagaatgaa
tctgaggatgatgaatctgacgatgaagagaattctcaggatgaaaacgatgacggtttc
attgtccatgatagtgttgatccaaatgatgaagaggacgcaagagagatgtatcatcgt
cctctgctaccaaatgaagatgaccaggaagatcctgcagatattcagagaagacttaag
gagaagtacggtgatgcagtatattatgatgacgatgatgattatgatgatgatgatgat
gcgacagaggttgaacagcaagctctcttgccatctgttcgtgatccaaagttgtggatg
gtcaaatgtgcgattggtcacgagagagaggtggccacttgcttaatgaagaaatgcatt
gattcaggttccgagatgcaaattaaatctgctattgcacttgactatttgaagaactat
atctatattgaagctgataaagtagcccatgtcaaagaggcttgcaagggtatgcgtagt
atatatcccggtggtaagattttgctcgtccctataaaggaaatgactgatgttctatca
gccgagagcaaaactgttgatcttcccagggacacgtgggtcagaatgacggccgggact
tacaaaggggaccttgcacgggttgtcgaggcagataacatgagacggaaagttacagtg
aaattaataccaaggattgacttacaagccttggtaaacagattggatggtagggaagct
ccaaaaatgaagatatttacacctccaccgcgctttattaatttcgatgaagcaagagca
atgcatattcccgttgagcataggtgggttcaaaggactggtgattattttgaaattata
aatggcatgaagttcaaagatggattattgtataaaactgtgtccattaaatcgataagc
actcagagtatacaaccaagtttggatgaacttgaaaagtttcggcagcctgacgaggat
ggggatggtgatgttagctggtcaacactcttaactaaaagacagaaaggacattttatg
aagggtgatcgagttattgttataaagggggaactgaaaaaattgaaaggatgggtggag
aaagtcgaagaagggactgttcatataaaatcggatgaggatggtcttccaaaaactctc
tctgtaagtgaaagagagctctgcaagtactttgaggtagggaatcatgtaaaagttgtt
tctggtgcccaaaaaggtgtgactggaatggtagtaacagttgaaggtcatttggttaat
atagtgtccaataccaccaaggaagttctacgagtgttctctgactatgttgtcgagagt
tctgaaataacatctggtgtcactaaagttggggaatttgagctccatgatcttgtccaa
ctggataacgtcaactttggagtaatcataagagtagacagtgaagcttttcaggttctg
aagggtgctgtggatagagcatatgtacaaattgttaggttaagagacattaaatacaaa
attgataggaaaatgtccgctcatgaccattataagaacacggtatcagtgaaagatgta
gttaaggttctggaaggtccatgtaaggggaaacaaggtcttgtcgaacacatatataaa
ggaatgctatttatatatgatcgtcaccatctggagcatgctggatttatttgtgctaag
gcccaatcatgcgttttagttggtggttcccgagccaatggtgatagaaatggcaatctg
ttgacttcaaggcctgctcatcttagcactccgactcattttcctaattatccaggaaga
ggaggtccaccactacctggtgggaggcacagaggtggtggaagagggaaagattcacta
gttggcacaaccatcaaaattcggatgggtgcctacaaaggatacaaggggcgggttctc
gatgtcagtggaacatctgttcaggttgaattggagtcacaaatgaaagttgttagagtt
gaacgcaatcaaatttatgatgtgaaagctactaccccgtacggtgaaacacataggtat
gggtatgatggaagtgagacacctatgcatccttcacgaaccccacttcatccgtacatg
acccctatgagagatcccggagcgacacctattcacaatggcatgaggacacctatgcgt
gacagggcatggaatccatatgcaccaatgagtccttcaagggactcttgggaagaagga
aaccctggttcttggggaactagtcctcattcaagagcatatgaagcaccgactcctggc
acaccgagggatactacctctgcctatgctaatgctccaagcccttacttaccatcaacg
cctggtcgacagctgcccatgacacctggtactccccgtgaccaaccaatgactcctgga
ggtggcagtttggacatgatgtcgcctgcagtaggtcgacatatagatggatctttgttc
ctgccagacatattggtaaacgttcgcagaccagctaaagatgctgtcattggtgtcatc
cgagaagtgcttctggacggtgtgtgtcgagtagctcttggttcaactggatatggtaat
gttatcactgctatgcccaacgagattgaggtgctagtgccaaggagattagacaaagtt
aagataataaatggagctggtcgcgggtccactgggaaactgattggtattgatggcacc
gaaggaatcgttaaaatggatgacagtcatgaccctataaatcctaaaatattagatatg
gatattttagccaagttagcaacataa
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