Erigeron canadensis (horseweed): 122601459
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Entry
122601459 CDS
T07610
Name
(RefSeq) uncharacterized protein LOC122601459
KO
K19026
spatacsin
Organism
ecad
Erigeron canadensis (horseweed)
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ecad03400
]
122601459
DNA repair and recombination proteins [BR:
ecad03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
122601459
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
122601459
NCBI-ProteinID:
XP_043630154
LinkDB
All DBs
Position
1:33148487..33170793
Genome browser
AA seq
3051 aa
AA seq
DB search
MTVSFGEEGPAIVQLQKWEPSRLKTTMAQFREAFLSPTREFILLLSHNHDGLLLPLVKGV
TMDDQINSNPMDMGSTSTHPLQTDYVSNSFPMISGINSLAWSVCEDSNSQHEGGLFRELL
FIVGDHELTVHAFCQPNDCNKPVEAMSDEKNEEGIWVEWGPSTSSDAMQLDEPDNDSENK
NVEQRRWLRTFLTKVKMVKSEGKLYSRFPDKSQFPSSSTVVSFNIFENDSTILRFVLEGN
TKLDPEGDEMNISYKCCRVFVNNSHDLIGFVLTFPSVYSDNESERKQIKFLLVGRIVSWG
IQWVSSVKLDEDVYMVPVDQWTDFSFSDKYLICLNSAGQIYFFSYITGEYIACVNLLEIY
GLKKLSDKTSDSGKGVFRKLLVASHTSLLAAVDDYGIVYVICASDHVQGINNSVKKSLPQ
FQKLRYQTFDGWEVGGADISHQMLYDNLSPDIRFVKDRGFSIENMQSNESGITGFSATLQ
RVEHKIHSSEKLTYALRSIFLPTDKHDNDDIICLSPFGITRLSRKYSTLRIGTSRIIHTN
MYVDSATNDEKGSNSGSQEVTLGDTVGCMFHGCVYLITSDGLSVVLPSISVASGCVPVEA
IGYRQNSSCSTDQPVNLIEIKGLKQPWPTWKIEVLDRVLLYEGHKEADHLCSENGWNLKV
SRIRRLQLALDYLNYQEIEISLEMLASVSLAEEGVLRLIFAAVYLMLNKGGNDNDVSAAS
RLLSLGTHFSTKMIRRYGSLQYMSNGIMSRSIPGMKDTSPPLLLADKEHSETENLRRLQE
IARLLEIIRNMQCRLATKFKKSVTRLRDGLKPLEFVDSEIPHDDPNPSSLETTNEQEKHA
LISMELVDSRSNSELESLRGASIPQVDTSFLNRSAIPFENPKDMMARWELDNLDQKNIVK
DALLSGRLPLAVLKLHLFRQEDMDTNKDPNDTFEKVRDIGRAIVYDLFLKDDIELGVTTL
QKLGEDLESCLRQLVFGAVRRSLRKQIAEVMKSYGYLGPYEMKILERIAFIEGIYTCSSF
SGTFHAQQTEIMAVNNVNSTEEIKLPLLHLLSNNLMIECGELDGAVLGLWRHISKNTKVP
VIDDDDTHHCYWAAAAVWSDAWDQRIMDRIVLDRLSLVDLNVSWESQFEYHISHSNWEEA
LGLVDIIPSYSSSLGNLQISLDGLPSTSAVNKSEFSDYGNYIYSIQDLDAVCMDVPDIRI
LRFPTINTCSMWLKSLLESQLAKKFIFLKEFWEGTEEIVCLLARSGFVTNSSDLSFTELS
INESAELPLAKIDDGISTVAFQGLHKLFLHHCIQLNLPYLLDLYLDHHKLAIDREPLFDL
LEATGDCHWAKWLLLSRVKGNEYEASFSNARAIASHNFSLGNTLGAVEIDDIIHTVDDIA
EGAGELAAIATLMYAPVPIQDCLSTGSVDRNRSSSAQCTLENLRPAMQRFPTLWRTLVAA
CFGQDSIGNYISSRSKVFGNSYLSDYLNWRDNIFYSAGHDTSLEQMLPGWVSKAVRRLVQ
LYVQGPLGWQSVPGLPVEESLFLRDVDCNEQAKISTLSWEAAIQRHVEELYGSSVEGSGL
GLEHHLHRGRALAAFIHLLSLRVKKLKFDFETRRLQSDSSVNEQSNIQFDVHTLLSPITQ
EEESLLSSVMPLAVMHFEDSVLVASCAFLLELCGLSPTMLQVDIAALRRISSFSKSADYT
DKSVQPSFKGSTFLSTSLEDDITGSLARALAEYYLKNYNTGIVKEKDKEKQATRALVLVL
QNLEKASLPSLISGETCGSWLMSGNGDGAELRSQQKAASQHWSLVTDFCRMHQITMSTKY
LAVLAKDNDWVGFLSEAQIEGHPLDTVIQVASKEFSDPCLKVHISTVLKGMQSRKNSPSS
SNSSSTNKKNESSFMEDNDYIPVELFGIIADCEKQKNPGETLLLKAKDLCWSVLATVASC
FPDVSPLCCLTVWLEITAARETSSIKVNDIASQISSNVAAAVEANNLLPVTARAQTLHYN
RRNPKRRRLMESEPVDTLASKGSDVSTASSNTSIFIDQNIISGEESNEMADENKISTESD
KVFTSLSKMVAILCEQRLFLPLLRAFEMFLPSCSLLPFVRALQAFSQMRLSEASAHLGSF
SARIKEEHPSIQTTSGKDGCIGSSWVSSIAEKASDAMLMTCPSPYEKRCLLQLLSATDFG
DGGYAMSNYRRMYWKINLAEPLLRKDDILHLGNESLDDDSLLTALETNGHWDQARNWAKQ
LEASGGTWKSAGHHVTETQAESMVAEWKEFLWDVPEERVALWGHCQMLFLRHAFPPLQAG
LFFLKHAEAVDKDLPPKELHELLLLSLQWLSGTITQSAPVYPLHLLRELETRVWLLAVES
EAQVKSEGGLTLNNPSREVGYGKASSIVDHTASIVSKMDNHINSVKIRNERDHNLAHKRS
PHLVDAATSSSSGANTKSKRRAKGVVPSRKPFVDVEKAADSEDTSRMESLSRWEESIGPA
ELERAVLSLLEFGQISAARQLQHKLSPSHLPSEFTLVDAALKLAAISTPSNKVTVSMLDD
EVRSVIQSHNLPVDNQLVDPMQVLESLTTFFVDGKGRGLCKRLMSVVKAANVLGLSFSEA
FDKTPIELLQLLSLKAQDSFEEAYLLIQTHSMPAGSIAQILAESFLKGLLAAHRGGYIES
QKEEGPAPLLWRFSDFLKWAELCPSESEIGHALMRLVITGQEIPHACEVELLILSHHFYK
SSACLDGVDVLVALAATRVDAYVSEGDFPCLARLITGVGNFHALNFILGILIENGQLELL
LQKYSAAADTHTGTTQAVSGFRMAVLTSLKQFNPNDLDAFAMVYNHFDMKHETASLLESR
AEQSYHMWFHRYNKDHTEDLLDSMRYYIEAAEVHSSIDAGKKTRAACASASLVLLQIRMP
DFQWLSLSATNARRALVEQSRFQEALIVAEAYGLNQPGEWALVLWNQMLKPELTEQFVAE
FVAVLPLHPTMLAEIARFYRAEVAARGDQSQFSVWLTGGGLPAEWAKYLERSFRCLLKRT
RDLRLRLQLATVATGFTDIINGCLKALDRVPDNGGPLVLRKGHGGAYLPLM
NT seq
9156 nt
NT seq
+upstream
nt +downstream
nt
atgactgtcagctttggcgaagagggacctgctattgttcaactacaaaaatgggaacct
tcacgattgaaaacgaccatggcacagtttcgtgaagctttcctttccccaaccagggaa
tttatattattactttcgcataaccatgatgggctacttctgcctttagtcaaaggtgta
acgatggatgatcaaatcaattctaatccaatggatatgggttcaaccagtacacatcct
cttcaaactgattatgtatctaatagctttcctatgatttctggtattaattcacttgct
tggagtgtatgtgaggattcaaatagtcagcacgaggggggcttattcagagaacttctt
ttcattgttggagaccatgagttgacggttcatgcattttgccaacccaatgactgcaac
aaacctgttgaagctatgtcagatgagaagaatgaagaagggatatgggtggaatggggc
ccatctacctcaagcgatgcaatgcagttagatgagcctgataatgatagtgaaaataag
aatgttgaacaaaggagatggttgagaacttttcttactaaagtcaaaatggtcaaatcc
gaaggcaagctttacagcagatttccggacaagtcacagtttccgtcttccagtacagtt
gtttcctttaacatatttgaaaatgattctacaattctgagattcgtactagaagggaat
accaagttagatcctgagggtgatgagatgaacatttcatacaaatgctgtagagtgttt
gttaataattcacatgacctaattgggtttgttttaacattcccatctgtctactctgat
aatgaatctgaaagaaagcaaataaaatttttactagttggtaggatagttagctggggc
atacagtgggtcagctcggtgaagcttgatgaggatgtatatatggttcctgtggatcaa
tggacagacttcagtttttctgataaatatcttatatgtcttaattctgcgggacaaata
tattttttcagctatataactggtgaatacatcgcatgtgtcaatctcttagagatatat
ggattaaaaaagttatccgataaaaccagtgattctgggaaaggtgtgtttaggaaactt
cttgttgcttcacatacatcattgttggctgcagtcgatgactatggtatagtttatgta
atttgtgccagtgaccatgttcaaggtataaataactcagttaagaagtctctgccacaa
tttcaaaaattaaggtaccagacatttgatggttgggaggttggtggtgctgacatcagc
caccagatgttatatgacaatctatctccagacataagatttgtaaaggatagaggtttt
tctattgaaaatatgcaaagtaatgagtcaggtatcactggtttctcagctactttacag
agagtggaacataagatccacagttctgaaaagttaacctatgctttgagaagtatattt
cttccaacagataaacatgataacgatgatattatttgtctttctccatttggaatcact
cggctcagtagaaagtatagtacactgagaatagggacttcacgaattatacatactaac
atgtatgtagattcagctacgaatgatgaaaaaggctcaaatagtggaagtcaggaagtt
actttaggagatacagttggttgcatgttccatggatgtgtgtatctgatcacatcagat
ggtctttctgtagttcttccctccatatcagtagcttctggttgtgttcctgttgaagcc
attggataccgccagaatagtagttgctcgacagatcaacctgttaacctcatcgaaata
aaaggattgaagcaaccctggccaacttggaaaatagaggttctggatagagttctttta
tatgaaggccataaagaggcagatcacttatgctccgaaaatgggtggaacctgaaggtt
tctcggattcgtcgcttgcaactggcattggattacttgaactatcaggagattgagatt
tcgttagagatgcttgctagtgtgagtttggcagaagaaggtgtcctgagattgatcttt
gctgctgtttatttgatgttgaacaaaggtggaaatgataatgatgtatctgctgcttca
aggcttctgtctttgggcacccatttttctaccaaaatgatacgcagatacggctcattg
cagtatatgtcaaatggaattatgtcaagaagtattccgggcatgaaagatacttctccc
ccattgcttttagcagataaagaacatagtgaaactgagaatctaagaaggctacaggaa
atcgctcgcttgctggagattataagaaacatgcaatgtagacttgcgactaaatttaag
aaatctgtaacccgcttgagggatggtttaaaaccattggaatttgtggattcggaaata
ccacacgatgatccaaatccctcatcgctggaaacaacaaatgaacaggaaaagcatgct
ttgatatcgatggagttagttgactcaagatccaattcagagttagagagcttacgggga
gcgtctattcctcaagtagatacaagttttttaaataggagtgccattccatttgaaaat
cctaaggatatgatggcacgttgggaattagataatttagaccaaaaaaacatagtgaaa
gatgcattattatctggtcgtcttccattagcagttcttaaattgcatctttttcgtcaa
gaagatatggatactaacaaagaccctaatgatacctttgagaaagttcgtgatattgga
agagctattgtctatgatctgtttctaaaggatgatattgaacttggtgtaaccacgtta
caaaagcttggagaagacctggaaagctgcttaaggcagctggtttttggggctgtaagg
agatctcttcgaaagcaaatagctgaagtgatgaaaagttatggatatcttgggccttat
gagatgaagatattggaaaggatagcgtttattgaggggatatacacttgcagtagtttc
tctggaacattccatgcccagcaaactgagataatggcagtgaacaatgtcaattcaaca
gaagaaatcaagttgcctctgttacatttactatccaataaccttatgattgagtgtggt
gaactagatggagctgtgttaggtttatggaggcacatcagcaaaaatacgaaagttccg
gtgattgatgacgatgatacccatcattgttactgggctgcagccgcagtctggtctgat
gcttgggatcagagaatcatggatcgtatagtgctagaccgactttctcttgtggatctc
aatgtctcatgggaatcacaatttgagtaccacatatcccacagcaactgggaggaagct
ctcgggcttgtagatatcattccgtcatactcatcatcactaggaaatcttcaaattagt
ttggatggtttaccaagtacttctgctgtgaacaaaagtgaatttagtgattatggaaac
tacatatattctatacaagacttggatgctgtgtgcatggatgtcccagatatcagaata
ctaagatttcctacaattaatacatgctccatgtggttaaagtcacttttggaatcacag
ctcgctaagaaattcatatttcttaaagaattctgggagggtactgaggaaatagtatgt
cttctggcacggtcaggctttgtcaccaattccagtgatctatcttttaccgagctatca
ataaatgagtcagcagagttgccgttagcgaaaattgatgatggcatcagcactgttgct
ttccagggtctgcataagctttttctgcaccattgtattcaacttaacttgccatacctg
cttgatctttaccttgatcaccataagttggctatagatcgtgaacctcttttcgacttg
ctagaagctactggagattgtcactgggcaaagtggttgctcttatcaagggtcaaagga
aatgagtatgaggcatcattttcaaatgctcgtgcaattgcatcacataatttttctcta
ggaaatacccttggtgcggtggaaatcgatgatataattcatacagttgatgacattgct
gaaggagcaggagaattggcagctatagccacattaatgtatgcacctgttcctattcaa
gattgcttgagtactggtagtgtagatcggaatcgcagctcttcggctcagtgtacatta
gagaatcttaggcctgccatgcaacggtttcctacgctatggcgcacacttgtagcagca
tgttttggacaagattcgatcggcaattatattagctctagatcaaaagtgttcggaaat
tcttatttatcagactacctgaactggcgtgacaatatcttttactctgctggacatgat
acttcactcgaacaaatgcttccaggatgggtctctaaggctgtccggagactggttcag
ctttatgtacagggtcctcttggttggcaatctgtaccaggattgccggtggaagaatct
ttgtttcttagagatgttgattgtaatgagcaagccaagatcagcacgttgtcctgggaa
gctgctatccagagacatgtagaggaattatatggttcttcagtagagggatctggactt
gggcttgagcatcacctgcatcgtggtcgtgccttggcagcttttatacatctcctttct
ctgagggtgaaaaagctgaaattcgattttgaaacacgtcgactgcagtcagattcatct
gtaaatgagcaatcaaatattcaatttgatgttcatactctactttctccaataacacaa
gaggaagagtctcttctttcatctgtcatgcctcttgcggttatgcattttgaagattct
gtgttggtggcttcttgtgcttttcttttagagctatgtggattatctcccaccatgctt
caagtggacattgcagctctgaggagaatatcttctttctctaaatctgctgattatacc
gacaaatctgtgcaaccttcatttaagggctccacatttctttcaacatctcttgaagat
gatataactggttctctggctcgagcattggccgaatattatttgaaaaattataatact
ggcattgtgaaagaaaaagataaagagaaacaagccactcgagcacttgtgcttgtcctt
cagaatttggagaaggcaagtctcccatcactgattagtggagaaacatgtggatcttgg
ctaatgagtggaaatggtgatggagcagagttaaggtcacagcaaaaagctgcaagtcag
cactggagtttggttacagatttctgtagaatgcatcagatcaccatgagcacgaaatat
ctggcagtgttagctaaagacaatgactgggttggatttctgtcagaggctcaaattgaa
ggacatcctcttgacactgtcattcaagtggcttcgaaggagttcagtgatccttgtctt
aaggttcatatttcaacagttctcaaaggaatgcagtcacgaaaaaactccccttcctcc
tcaaactccagtagcacaaataaaaagaatgaatcttcatttatggaagataatgattac
attcctgttgaactttttggtatcatagctgattgtgagaagcagaaaaatcctggagag
accctcttgttaaaagcaaaggatttgtgctggtcagttttagcaacagttgcttcatgt
tttccagatgtatctccattatgctgcttaacagtttggctagagataacagcagcaagg
gaaacatcatctatcaaggtgaatgatattgcatctcagatatccagtaatgttgcagca
gctgtggaagctaacaatctattgccggtgactgctagagcccaaacacttcattataac
cgtaggaatcccaaacgtaggcggctaatggaatccgagcctgttgatacattagcttca
aaaggatctgacgtttctactgcttccagcaacactagcatattcattgaccaaaatatc
atttctggagaagaaagcaacgaaatggccgatgagaataaaatttcaacagaatctgat
aaagtgtttacctctttatccaaaatggttgcaatactttgtgagcaacgtctatttctt
cctttgctaagagcttttgaaatgttccttccatcatgctcactactgcccttcgtccgt
gctcttcaggcattctcccagatgcgtctgtcggaagcttctgctcatctagggtcgttt
tctgcaagaattaaggaagaacatcccagcatacaaacaacttctggaaaagatgggtgc
attgggagttcgtgggtaagttccattgcagagaaagcttctgatgcaatgcttatgaca
tgtccatctccatatgaaaaaagatgcttattgcaactactatccgccaccgactttggt
gatgggggatatgccatgtcaaactaccgaaggatgtattggaagattaatttagcagag
cctttgttacgtaaagatgatattttacatctagggaatgaatctttggatgatgattca
cttttaactgccttggaaacaaatgggcactgggaccaggcacgcaattgggccaaacag
ttggaggctagtggtgggacttggaagtcagctggacatcacgtgactgagacacaggct
gaatcaatggtggcagagtggaaagagtttctttgggatgtccctgaagagagggttgca
ctatggggccactgccagatgctctttcttaggcatgcttttcctccgcttcaggccgga
ttatttttcctgaaacatgcggaagctgtggacaaagatcttccgcctaaggaactgcat
gaattgttgcttctttctctccagtggttaagtgggacaattactcagtctgctccagtg
tacccgctacatcttctgagggaacttgaaactagagtatggctattggcagtagaatca
gaagctcaagtcaagagtgaagggggattgaccctgaacaatcccagtagagaagtggga
tatggaaaggcatcaagtattgtagaccatactgcaagtattgtatcaaaaatggacaat
catattaactcagtgaagataaggaacgagagagaccataatttggcacataaaagaagc
ccacatctcgtagatgcagccacttctagtagctcaggagcaaacacaaaatcaaaacgt
agggcgaaaggcgttgtgccatcacgaaagccttttgttgatgttgaaaaagctgctgat
tctgaagatacttctcgaatggaatccttgtcaaggtgggaagaaagcattggacctgct
gagctggagagggcagttctttctctgttggagtttgggcaaatatcagctgcaaggcag
ctccagcataagctatctccgtcacatttaccatcagagttcactcttgtggatgcagcg
ctgaagcttgcagctatctcaactcctagcaacaaagtaacggtttccatgttagatgat
gaagtgcgttctgtaattcagtcgcacaacctaccagttgacaatcaacttgttgatcca
atgcaggtattggaaagtttgacgacctttttcgtagatggtaaagggcgtggattgtgt
aaaagattaatgtctgtggtgaaagctgcgaatgttttgggtctttcattttcagaggca
tttgataagactcccattgaactgctacaactgctttctcttaaggcgcaagactcgttc
gaggaagcatatctcttaattcaaactcattccatgccagctggtagtattgctcagatc
cttgcagaatcttttttaaaggggttattagctgcacatcgtggtggttatattgaatct
caaaaggaggaaggccctgcccctttattgtggagattttctgatttcctgaagtgggct
gagctgtgtccgtcagaatcagaaatcggtcatgctttgatgcgtttagtgattactgga
caggaaataccacatgcgtgtgaggttgagcttcttattctatcacaccacttctacaag
tcgtccgcttgccttgatggtgttgatgttcttgtggccctagcagcaaccagagtagat
gcatatgtttctgaaggcgatttcccatgtttggcccgcctaataacaggagttggaaat
tttcatgccctcaattttattcttggaattcttattgaaaatgggcagttggaacttctc
cttcagaaatactcagctgccgctgacactcacactggcaccactcaggctgtcagcgga
ttccgtatggctgttctcacatcactcaagcaattcaaccctaatgatctcgatgcattt
gccatggtatataatcactttgatatgaagcatgaaacagcttccctactcgaatcacgg
gctgaacaatcatatcacatgtggtttcatcgttacaataaggatcacacagaagacctc
ttggattcgatgaggtattatattgaagctgctgaagttcattcttccattgatgctggt
aagaaaacccgtgctgcttgtgctagtgcatctctcgttttacttcagattcggatgccc
gatttccagtggctcagtttatctgctaccaatgcacgacgggctcttgtggaacaatcc
cgttttcaagaagccctaattgttgctgaagcatatgggctgaatcagcctggtgagtgg
gcgctggttctctggaatcagatgttaaaacccgagcttactgagcagtttgtagcagag
tttgtggcagtcctccctcttcatcccaccatgcttgccgaaatcgcacggttctataga
gctgaggtggcagcccgtggggatcagtctcagttctctgtttggctgacaggtggaggg
ttacctgctgagtgggcaaagtatctagaaagatcatttagatgtttactaaagaggaca
agggatctacggctgagattgcagttggcaacagtagctacaggattcacggatattatt
aatggctgcttgaaagcattggatcgagttcctgacaatggtgggccccttgtgttgagg
aaagggcatggtggcgcctaccttccattaatgtaa
DBGET
integrated database retrieval system
