Erigeron canadensis (horseweed): 122601497
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Entry
122601497 CDS
T07610
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like
KO
K14791
periodic tryptophan protein 1
Organism
ecad
Erigeron canadensis (horseweed)
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ecad03009
]
122601497
Ribosome biogenesis [BR:
ecad03009
]
Eukaryotic type
90S particles
Other 90S particles
122601497
Pre-60S particles
Other pre-60S particles
122601497
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40_CDC20-Fz
WD40_Prp19
WD40
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_EML_2
WD40_WDHD1_1st
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR3_2nd
Beta-prop_HPS5
EIF3I
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_IFT140_1st
Beta-prop_EIPR1
Beta-prop_WDR35_TULP_N
Beta-prop_SPT8
Beta-prop_WDR75_1st
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
WD40_Gbeta
WD40_RFWD3
Beta-prop_Aladin
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_TEP1_C
PEP5_VPS11_N
WDR90_beta-prop_4th
PROPPIN
Beta-prop_WDR41
FkbO_Hyg5-like_N
Apocytochr_F_C
Motif
Other DBs
NCBI-GeneID:
122601497
NCBI-ProteinID:
XP_043630187
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All DBs
Position
5:complement(28525608..28537781)
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AA seq
259 aa
AA seq
DB search
MTVVRDSVWVHEQYSLKKRNLIGGSKHIPVRRRAGDILYYKVEVNRNSTHEGPVLDVSYN
STRRLLASSSTDCVVRVWNLPTARRIRDYKNHTSQVNAVEWNPINHDFFLSGSNKEVILD
DSRDYEPPKRWATKSEVKTVAWNHSNQYQFMINCADGTALVQDIRNGPHLAVGDGDISAV
SYHPTKNVYAMGSRTGMVKVWEANSSKELQQVNHMFRRSGRNKKARENICISCLSFSPDG
ENLAYGTTNGTFGLIKVQS
NT seq
780 nt
NT seq
+upstream
nt +downstream
nt
atgactgtggttagagactctgtttgggtgcatgaacaatattcactcaagaaacgaaat
ctaataggagggagcaagcatataccggtgaggaggagggccggcgatattttgtattat
aaggtggaagttaatcgtaactcaacccacgagggtccggtgcttgatgtttcatataac
tcgacgcggaggctccttgcaagctcaagcaccgattgtgttgtcagggtttggaatcta
ccgactgcacgacgtattagagattataaaaaccatacgtcacaggtcaatgcagttgag
tggaatcctatcaaccacgatttttttcttagtggttcaaacaaagaagtaatactggat
gattcaagggattatgaaccccctaaaaggtgggctaccaagtctgaggttaaaacggta
gcatggaatcatagcaatcagtatcaattcatgattaattgtgctgatggaactgcttta
gtgcaagatatacggaatggaccccatctcgctgtcggtgatggagatatctctgccgtt
tcttaccatcccacaaagaatgtgtatgctatgggatcacgaacgggaatggtaaaggtg
tgggaagctaattcgagtaaggaactacaacaagtgaatcatatgtttcggcggtccgga
agaaataaaaaagcaagggaaaatatatgcatatcctgtttgtcattttcccctgatgga
gaaaatttggcatacggcactaccaacggaacctttggcctcatcaaagtgcaatcctaa
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