Erigeron canadensis (horseweed): 122601652
Help
Entry
122601652 CDS
T07610
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B-like
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad04120
Ubiquitin mediated proteolysis
ecad04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
122601652
04120 Ubiquitin mediated proteolysis
122601652
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ecad04121
]
122601652
Enzymes [BR:
ecad01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122601652
Ubiquitin system [BR:
ecad04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
122601652
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
FlxA
zf-ANAPC11
zf-RING_5
zf-RING_16
Nuf2_DHR10-like
Prok-RING_4
zf-HC5HC2H
zf_RING_Vps8
HR1
zf-Di19
Prefoldin_2
ZapB
Motif
Other DBs
NCBI-GeneID:
122601652
NCBI-ProteinID:
XP_043630333
LinkDB
All DBs
Position
1:complement(48248554..48253893)
Genome browser
AA seq
566 aa
AA seq
DB search
MMRLQTYAGLSVVATLAVIYHAFSSRGQFYPATVYLSTSKVCLVLLLNMGLVIMCIMWQL
TKRIFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVMFLAMVTALLLIKSLHWLA
QKRVEYIETTPTVPTLSHIRIVSFMGFLLLLDCLFLYNSVKYLIQTRQASVSLFFSFEYT
ILATTTMSTFVKYVFYVSDMLMEGQWEKKAVYTFYLELIRDLIHLSLYLCFFLVIFVNYG
VPLHLIRELYETFRNFKLRIADYIRYRKITSNMNDRFPDATSEELNASDATCIICREEMT
TAKKLVCGHLFHVHCLRSWLERQHTCPICRALVIPNEGGTSTTSSRAGAHRQGTNSANAS
SHERTGDGAGSGNISSHQKRVQAAASAASIYQKSFVYPSPGSLTWSSGYAVHPNKSPLGA
NINNVASSGEHDDSTLNNPANFPSFQFPQTGFVPIQVPGASPNPEDGWSTNLQMSVSQLE
AQKKKIQHQIEVLQDQLQRLQNPATEKSTVAESSSSSSTSSWEMDLPTASDSKGKAVLTS
SLSIPGGDQNQHGMDDKRDDVNNSPL
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgatgaggctgcagacgtatgcgggactcagcgtggttgccacgctagccgttatatat
catgcttttagtagtagaggacagttttacccagcaacagtttacttatccacttccaaa
gtctgtttagtgcttcttctcaacatgggtttagtgatcatgtgcattatgtggcagctg
acaaaacggatttttctaggttctctgcgtgaagcggaggttgaaagattgaatgagcaa
tcttggcgagaagttatggaaattctttttgctataactatattccggcaggatttctct
gttatgtttcttgctatggttactgctcttttactgattaagtctttgcattggttggca
caaaagagagttgaatatattgaaactactccaactgtgcctacgttgtctcatattcgg
attgtttcgttcatgggattccttcttcttctagactgcctatttttgtacaactcagtc
aagtacttgatacaaacgcgtcaagcttcggtttccctgttcttttcatttgagtacacg
atattggctacaacgacaatgtcaacatttgtcaaatacgttttctatgtcagtgacatg
cttatggaaggacagtgggagaaaaaggccgtgtacacgttttatttggagcttattcgt
gacttgatacacttatccttgtatttgtgttttttcctcgtaatttttgtgaactatggc
gtgcctctgcacttgatccgggagctttatgagacattcagaaactttaagctgcgaatt
gctgattacatccgttatcggaagataacatccaatatgaatgatcgatttccagatgca
acatccgaagagttgaatgcaagtgacgcgacttgcattatctgtagagaggagatgact
acagcaaagaaactagtctgtggtcatcttttccatgtgcactgcctccgttcatggtta
gaacgacaacatacatgccccatttgtagagcacttgttataccaaatgagggcgggaca
agcacaacaagttcacgagctggagctcatcgtcaaggaacaaactcggcaaatgcttcg
tctcatgaacggactggtgatggtgctggaagtgggaatatcagcagtcatcaaaagcga
gttcaagctgctgcatcagctgcttccatttatcaaaaatcttttgtttacccatcacca
ggctctttaacatggtcatctggatatgctgtacatcccaacaaatccccactcggggcc
aacataaataatgtggcctcttctggcgagcatgatgactcaactttgaataatccggcg
aacttcccatcttttcagttcccacaaacaggctttgtgccaattcaagttccaggtgca
agccctaacccggaggatggatggagcaccaatctccagatgtcagtctctcaattggag
gcccagaaaaaaaaaattcagcatcagattgaggttttgcaagatcagcttcaacgttta
cagaatccagcaaccgagaaaagcacagttgcagaaagcagcagcagcagtagcactagt
agttgggagatggatctgcctactgcttctgacagcaaagggaaggcggttttaacatca
tctttgtcgattccgggcggtgaccaaaatcaacatgggatggatgataaacgagatgat
gtgaacaattcaccattgtag
DBGET
integrated database retrieval system
