Erigeron canadensis (horseweed): 122601923
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Entry
122601923 CDS
T07610
Name
(RefSeq) pinin
KO
K13114
pinin
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03013
Nucleocytoplasmic transport
ecad03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122601923
03015 mRNA surveillance pathway
122601923
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122601923
03041 Spliceosome [BR:
ecad03041
]
122601923
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
122601923
Spliceosome [BR:
ecad03041
]
Complex C
Other components
EJC/TREX
122601923
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_memA
Olduvai
Motif
Other DBs
NCBI-GeneID:
122601923
NCBI-ProteinID:
XP_043630590
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All DBs
Position
5:23081191..23086426
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AA seq
413 aa
AA seq
DB search
MGTTEIEKTEQELRKEIEELHRQQWQITERLRDPRGIRRGGVAGSGARNQSALGPRQRGF
VRPADRNEDDQPARKRRLSSTVVRIEEGEIIEDSVDASKGEDGNKETSLEVAGLGGDGDI
QDSRKGPSWARRKMDSEVPPSDNVPRILPKNEDPSLVNRNRRMLGQLLGTLEKFRKEDVK
LSGSEAFMRRSDSLKKAEQRAREESERLRLQEREQIAEKRRRDLTLRARVAAKAEEKKLE
LLFLQWSEHHKKLGNFLRTKAEPPIYYSFAKELDEDSALREERKEQTFQEWKAARREELS
QYQQQIGEQFVANVEKELEKWQNGRQKRNGNNDMLNLQETMDKELETHRLEHGPKTRKIP
GAVNNDDEDDVEDINVGEDDMMDDVLDVDDSRRVEETTKLEAGTLSPPPVMKE
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgggaaccaccgaaatcgaaaaaaccgaacaagaacttcgaaaagagatcgaagagctt
caccgtcaacaatggcagattacagaaagactccgtgaccctagaggtatccgaagagga
ggtgttgctggttcaggtgctcgtaatcaatcggctttgggtccacgtcaacgtggcttt
gttagacctgcggataggaacgaagacgaccaaccagcgcggaaaaggcggctttcgtct
actgttgttaggattgaagaaggggagattattgaggatagcgtggatgcttctaaaggt
gaagatggcaataaagaaacgagtttggaagtggctggattgggaggcgacggtgatatt
caggatagtagaaaggggccgagttgggctagaaggaagatggattctgaagttcctccg
tcggacaatgttcctagaatattaccgaaaaatgaagatcctagtctggttaataggaat
agaagaatgcttggacagcttcttggaactctggagaaattcaggaaagaagacgtgaaa
ctctctggctcagaggcttttatgaggagatctgattctttgaaaaaagctgagcaaaga
gcgcgtgaagaaagtgagagactgaggctacaagagcgtgaacaaattgcagaaaagagg
agaagagacttgacgcttagagcacgtgttgctgccaaggcagaagagaagaaattggaa
ctgctgtttcttcagtggagtgagcatcacaaaaaacttggcaattttttaaggaccaag
gcagagccccctatatattactcatttgccaaagagcttgatgaagattcagccctacgt
gaggaacggaaagagcagacattccaagagtggaaggctgctaggagagaagaattgtct
caataccaacaacaaattggtgagcaatttgttgccaatgttgaaaaggagcttgaaaag
tggcaaaatgggagacaaaaaagaaacggaaacaacgatatgttgaacttacaagaaaca
atggacaaagaactcgagactcatagacttgaacatggccccaaaacacgcaagatccct
ggcgccgttaacaacgatgacgaggatgacgtagaagatatcaatgttggtgaggatgac
atgatggatgatgtgctggatgtcgatgacagcagaagagttgaagaaactacaaagctt
gaagcaggtactctaagcccacctccagtaatgaaagaataa
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