Erigeron canadensis (horseweed): 122602033
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Entry
122602033 CDS
T07610
Name
(RefSeq) probable NOT transcription complex subunit VIP2
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122602033
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122602033
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122602033
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122602033
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
122602033
NCBI-ProteinID:
XP_043630702
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All DBs
Position
5:40144421..40154309
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AA seq
578 aa
AA seq
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MSGILNSGVNGSTSTFPDATGRAYTTAFSGQLGASAADMNHNDAIGLRSLNGNYNLPSMP
GGYTSRNSGLNGPLNGIQPPTGNISNGRYAVNNLPVALSQQSAASSLGLSGMTNNGGSGI
PQSLGNREQLMSSMAMGNLVNGGNIGRSLSSGGLNMPGVASRLNLTAPQMVSLLGNSYTG
AGGPISQNQFQGGNNHLNSMALLTELNRDHSFDMNDFPQLSGHLSSAGGSQRQLGGLSRR
QSVGFMQQNQEFSIQNEDFPALPGYKGGNDFPVNMHQKEQLRDNVVSGMQSQQHLPVGRS
AVFSLGGSGYSSHQQQQHASLNGGSSYLPTNTQDLHFHGSEARNSGMLASGSRPVNLSNT
VSGGGSYDQLIQQYQHFQKQAQIRLASPFRDQDLKSTQASQSVADRFGLLGLLNVIRMNN
PDLTPLALGIDLMTLGLNLNSPDNLYKKFSSPWSDESAKGEPHYAIPECFNTKQPSPLNQ
DSFSRFSPETLFYIFYSMPKDEAQLFAANELHNRGWFYHRELRLWFSRAPNMELLVKTST
FERGCYYCFDPNTWETIRKDNFVVQYEMVEDRPVLPRR
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atgtccgggatacttaattcaggtgtgaatggctcaacgtcaacttttccagacgccacc
ggaagggcttatactacagcattttctggtcagttaggtgcctctgctgctgatatgaac
cacaatgatgcaatagggttgcgaagtttgaatggtaactacaaccttcccagcatgcct
gggggatacacatcaagaaattcgggattaaatggtcccttgaatggtatacaaccacct
actggaaacatatctaacggacgatatgcagtaaataatcttccggttgcactttctcag
caatctgctgccagctctcttgggctttcagggatgacaaacaatggagggtcaggtata
cctcaaagtttaggaaatagagaacagcttatgagctcaatggcaatgggaaacctagta
aatggtggaaacattggaagaagtttaagctctggtggactgaatatgcctggggttgct
agtcgcttgaatctaactgcaccccagatggtatctctcctagggaattcttacactggt
gctggaggcccaatttcacagaatcaatttcaaggagggaataatcatctaaattcaatg
gctttgctaactgagctgaatcgtgaccattcttttgatatgaacgatttccctcagcta
agtgggcatcttagctctgctggtggttctcaaagacaactagggggtttgtcacggcgg
caaagtgtaggctttatgcaacaaaaccaagaatttagcatccaaaacgaagattttcct
gctttgcctggatataaaggtggtaatgattttccagttaatatgcaccagaaggaacag
ctccgtgacaatgtggtgtctggcatgcaatcccagcaacatttgcctgtcgggagatca
gctgtattcagcttgggaggtagtggatattcatcgcatcaacaacagcagcatgcttca
cttaatggtggtagttcctaccttccgacaaacactcaagatctccattttcatggttct
gaggcaagaaactcggggatgcttgccagtggatcaaggcctgtaaacttgtcaaacaca
gtgtcaggtggtggttcttacgatcagctcattcagcagtatcaacactttcagaaacag
gcgcagatacgccttgccagtccgtttagagaccaggatttgaagtcaacccaggcatct
caatctgttgctgacagatttggattattgggtttgttgaatgtcataaggatgaacaat
cctgatttgacccctcttgctctaggtatagatcttatgacattgggtctaaacttgaat
tctcctgacaatctgtataagaagttttcatctccatggtcggatgaatctgccaaggga
gagccccattacgccattcctgagtgttttaacaccaaacaaccatctcccctaaaccaa
gatagcttctcaagattttctccagagaccttgttttatatattctatagcatgccaaag
gacgaggcccagttgtttgcggcaaatgaactgcacaatagaggatggttttatcaccga
gagctgcgtctatggttttcaagggctcccaacatggaactccttgtcaagacaagtact
tttgagagaggttgttattactgtttcgaccccaacacctgggaaactattcgaaaggac
aactttgttgttcaatatgaaatggtggaagaccgaccggtgcttccccgtcgttag
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