Erigeron canadensis (horseweed): 122602045
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Entry
122602045 CDS
T07610
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122602045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122602045
03012 Translation factors [BR:
ecad03012
]
122602045
Enzymes [BR:
ecad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122602045
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
122602045
Translation factors [BR:
ecad03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
122602045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
AAA_22
T2SSE
ATPase
AAA_19
AAA_16
nSTAND3
PhoH
Motif
Other DBs
NCBI-GeneID:
122602045
NCBI-ProteinID:
XP_043630716
LinkDB
All DBs
Position
1:complement(20679465..20692861)
Genome browser
AA seq
1188 aa
AA seq
DB search
MPLNSPLSIHTYLKLSLKSTTSSSFRRSFHLIPLKFIKNPKPSLLKSRPPLIFLCSSSSS
SSNYLIRKTRKNDDSYSLPYFYQQQSFPYGRYAYDEYASEDDSDREHFQCSPHNLGASTL
DNIDEWQYKLTTLIRNKDEQELVSREKKDRRDFDQLSALATRMGLQSRQYAKVVVFSKVP
LPNYRPDLDDKRPQREVVLSSELHSRVDYHLKSYLSQKSVTRDGYPNNSLPTSSTSTNLF
SEEGLHEQDEPIKRSPVAEGILRRRSVHLRNIQQDWQESAEGQKMQELRRSLPAYKEKEA
LLNAISRNQVIVVSGETGCGKTTQLPQYILESEIEAARGAQCNIICTQPRRISAMSVAER
VAAERGEKLGDSVGYKVRLEGVKGKDTRLLFCTTGILLRRLLLDRSLQGVTHVIVDEIHE
RGMNEDFLLIVLKELLPRRPELKLILMSATLNAELFSSYFGGAPMIHIPGFTYPVRSYFL
ENVLEMTGYRLSTYNQIDNYGQEKSWKMQKQTLRKRKSQIASAAEEALETVDLRDYNPRT
RDSLSCWNPDSIGFNLIENVLCHICRKERPGAVLVFMTGWDDINSLKDQLQAHPLLGDPS
KVLLLACHGSMDSSEQKLIFNKPEDGIRKIVLATNMAETSITINDVVFVVDCGKAKETSY
DALNNTPCLLPAWISKASAHQRRGRAGRVQPGECYHLYPKFVYDSFAEYQLPELLRTPLQ
SLCLQIKSLQLGSISEFLSRALQPPEPLSVQNAIEYLKVIGALDDQENLTVLGRKLSVLP
VEPKLGKMLILGAIFNCLDPIVTVVAGLSARDPFLMPFDKKDLAESAKAQFSGRDNSDHL
ALLRAYDGWKAAERQQSGHEYCWRNFLSSQTLRGIDSLKKQFHYLLKDGGLVDNIERCNT
WSHDQDLIRAIICSGLFPGICSVVNKKTSVSLKTMEDGPVLLYSNSVNSQEPTIPYPWLV
FNEKVKVNSVFLRDSTAVSDSVVLLFGGSVSRGGLDGHLKMLGGYLEFFMKPGLAGTYLA
LKRELDELIQVKLLNPKIDIGNHNELLESLKLLVSGDRCEGRFVYGRKASPVSKNTGKEA
EKKGTSSINGSIAENDNSKNHLQTLLLRAGHQPPTYKTSQLKNNKFRSTVLFNGLDFAGQ
PCGSKKLAEKSAAAEALQWLTGETQSSQKAIDHISTILKKSTKKSRVR
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atgccattaaattctccattatccatccacacttacttaaaactatctctcaaatccacg
acctcttcttcattcagacgttctttccacttaatcccccttaaattcatcaaaaaccct
aaaccctcattattaaaatcaaggccacctttaatctttctttgctcatcttcctcttct
tcttcaaattacttgattcgaaaaacccgaaaaaatgatgattcttattccttaccttac
ttttaccaacagcaaagtttcccttacggccgatacgcttacgacgaatacgcgtctgaa
gatgactctgatcgtgaacatttccaatgttctccacataatttgggggcttccactctc
gataacatcgatgagtggcaatataagcttactacactaatccgaaataaagatgagcaa
gagttagtttcacgagagaaaaaggacaggagagattttgaccaactctcagcactggca
actcggatggggttacagagccgtcaatatgcaaaagtagttgtctttagtaaagttcct
ttgccaaattacagaccagatctagatgataaacgtcctcaaagagaggtggttctttct
tcagaattacatagtcgggttgattatcatctcaagtcatacctttcacaaaaatctgtt
actagagatggttatcctaataacagtttacctacatcaagcacatccacaaatctattt
tctgaggaaggacttcatgagcaagatgagcctatcaaacgaagtcctgttgcagaggga
attctcaggcggagaagtgttcatctacgaaatatccaacaagattggcaggaatctgcc
gaaggccaaaagatgcaagaactacgaagaagtctacctgcttataaagagaaggaagca
ttgttaaatgctatttccagaaatcaggttattgtggtgtctggtgaaacgggttgtggt
aaaacgactcaactgcctcagtacatcttagaatcagaaattgaagctgctcgcggagct
caatgtaatattatctgtacccaacccagacgaatatctgctatgtcagttgcagagagg
gttgctgctgaacgaggggaaaagcttggtgactctgttgggtataaagttcgccttgag
ggagttaaaggaaaggatactcgtctgctattttgcactactggcattttgctaagaagg
ttactacttgacaggagcttgcaaggtgtaactcatgttattgttgatgagatccacgaa
cgagggatgaatgaagattttttactgattgttctgaaggagttacttcctcgccgacct
gaactcaagttaattttgatgagtgcaaccctaaatgccgagcttttctcctcttacttt
gggggggctccaatgatccatattcctggtttcacttatccagtaaggagttattttctt
gagaatgttttggaaatgactggatataggttgtcaacatataatcaaatcgataactat
ggccaagagaaaagttggaaaatgcagaaacaaactcttcgtaaaagaaagagtcaaatt
gcttcagctgctgaggaagcactcgaaactgtggatttaagagattataatccgaggact
agggattctctatcatgttggaacccagattcaattgggttcaatcttattgagaatgtc
ctttgtcatatttgtagaaaagaaaggccaggggctgtgttggtatttatgactggttgg
gatgacataaattctctcaaggatcaactccaggctcatccgctactgggagatccaagc
aaagtcttgctgcttgcatgccatggttctatggacagctcagaacagaaattgatattc
aataaacctgaagatggtatcagaaaaatagttctagccaccaatatggctgagacaagc
atcaccatcaatgatgtagtttttgtggttgactgtggaaaagctaaagagacgtcctac
gatgcactcaacaatactccatgtttgcttccggcctggatttcaaaagcttctgctcat
caaaggagaggaagagcagggcgtgtgcaaccaggtgaatgctatcatttgtatcccaag
tttgtatatgactcttttgctgagtatcagctgccagagttgttgaggacacccttacaa
tctttatgccttcaaattaaaagtctgcaactaggtagtatttctgagttcttatcaagg
gccttgcagccaccggaacctttatcagttcagaatgctattgaatatttaaaagtaatt
ggggctctagatgaccaagaaaatcttacagtgttgggccgtaaattgtcagtgcttcca
gtagaacccaagcttggtaagatgttgatattaggggccattttcaattgccttgatcca
atagtgactgtcgttgctggtctaagtgcccgagatccatttttgatgccatttgacaaa
aaggatcttgccgagtcagcaaaagcccagttctctggacgtgataatagcgaccacctt
gctcttcttcgtgcttatgatggttggaaagcggctgaaagacagcaatcgggtcacgag
tactgctggagaaatttcctatcttcacaaactctgagaggtattgattcgcttaagaag
caattccattatttgctcaaggatggtggcttggttgataatatagagagatgcaacaca
tggagccatgaccaagatctcatccgagccatcatctgctcgggtcttttcccaggaatt
tgctctgttgtgaacaaaaagacttcagtgtcactgaaaacaatggaagatggtcctgta
ttgctctactcaaattcagttaattcgcaagaaccaacaatcccatatccatggctggta
ttcaatgaaaaggtgaaagtgaattcggtttttctaagggattcaacagctgtgtcagat
tctgtagttcttctatttggaggaagtgtttcaagaggtggtctggatggacacttgaaa
atgttggggggctacttggagttctttatgaaacctggcttggcaggcacctatcttgcc
ttaaagagagagctcgatgaactcatccaggtcaagcttctgaacccgaaaatagacata
ggcaaccacaatgaacttctggagtcgctgaaactattagtgtcaggggaccgatgtgag
ggtagattcgtatatggccgtaaagcttcaccagtatcaaagaacaccggaaaagaagca
gagaaaaaaggaacgtcttccataaatggcagtatagctgagaatgataactcaaagaat
cacctgcaaacattgcttctcagagcgggtcatcaaccacctacctacaagacgtcacag
ctgaaaaacaataaattccggtcaactgtgttgttcaatggtttggattttgctgggcag
ccatgtggtagtaaaaaacttgccgaaaaaagtgctgctgctgaggctcttcagtggtta
acgggtgagacccaatcatcacaaaaggcgattgaccatatatcgaccattctaaagaaa
agcacaaagaagagtcgggttcgttag
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integrated database retrieval system
