Erigeron canadensis (horseweed): 122602334
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Entry
122602334 CDS
T07610
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
ecad
Erigeron canadensis (horseweed)
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122602334
03041 Spliceosome [BR:
ecad03041
]
122602334
03036 Chromosome and associated proteins [BR:
ecad03036
]
122602334
Enzymes [BR:
ecad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122602334
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
122602334
mRNA cycle factors
Common to processing body (P body) and stress granule
122602334
Spliceosome [BR:
ecad03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
122602334
Chromosome and associated proteins [BR:
ecad03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
122602334
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
122602334
NCBI-ProteinID:
XP_043630968
LinkDB
All DBs
Position
1:complement(56034816..56040981)
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AA seq
633 aa
AA seq
DB search
MSTSWADTVENAALGSESNGVGGAAAASGKPAYVPPHLRNRSAVPAQVAGPAASHGGGPP
VNDRLGHSGQTSGSRWAAPSQRFENGRPGYGTGSRGGGGRGWGNRGGGWGGRDVEVNPFG
NDDIDSPEEIASEQASGGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEALNLNIRRCK
YVKPTPVQRYTIPISLAGRDLMACAQTGSGKTAAFCFPIISGILKGQFAQRPRGTRTAFP
LALIISPTRELSFQIHEEARKFSYQTGVKVVVVYGGTPINQQLREIERGVDILVATPGRL
VDLLERAKVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQTDMPPPGARQTMLFSATFPS
EIQRLASDFLSNYIFLTVGRVGSSTDLIVQRVEFVQEVDKRSHLMDLLHAQKENDTHGKQ
ALTLVFVETKKGADSLEYWLYSNGFPATTIHGDRTQPEREQALKSFKSGKTPILVATDVA
ARGLDIPLVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLATAFFNENNVSLAKSLADLMQ
EANQEVPAWLTRYASRVSYGGGKNKRGGGRFGGRDFRKDNSYSGGGGYGSYGGGYGGGNS
GGGYGGGYGGGNSGGGYGGGYGGGSGGAPSAWD
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgagtacttcatgggcggacacagttgagaatgcagctttagggtctgaaagtaacggg
gttggtggggcggcagcggcttccggcaagcctgcttatgtcccacctcatcttcgtaat
aggtcggctgtaccagctcaggtagctggcccagctgcatcacatggtggtggacctcct
gtaaacgatcggttagggcatagtgggcagacaagtgggtcaagatgggcagctcctagt
caaaggtttgaaaatgggaggcccggatatggtactggcagtcgtggtggaggaggaagg
ggttggggaaatagaggtggtggctggggtggtagagatgtggaggttaatccttttggt
aatgatgatatagatagtcctgaggagattgcatccgagcaagcaagtggcggcatcaac
tttgatgcttatgaagatattcccgtggaaactagtggtgaaaatgtgccacctccagtt
aatacttttgcagagatagatttaggtgaggctctaaatcttaatattagaagatgcaaa
tatgtaaaaccgacacctgtacagcgttacacaattcccatttctcttgcgggacgggat
ttgatggcatgtgcgcagactgggtcagggaagacggcagcattttgcttccctataatc
agtgggattttgaaggggcaatttgcacagagaccacgtggtaccaggaccgcttttccc
cttgctctgattatatcccctacaagggagctctcctttcagatacacgaggaggcacgg
aagttttcttatcagacgggtgtcaaggtggtggttgtttatggaggaaccccaattaac
caacagttaagagagatcgagagaggagttgatatacttgtcgccactccaggaaggtta
gttgatttactggaaagggcaaaagtgtcactacaaatgataaggtatttagcccttgac
gaggcagatcggatgctggatatgggttttgagccacaaatcagaaaaattgtgcagcaa
acagacatgcctcctccaggtgcaagacaaacaatgttgttcagtgccacatttcctagt
gaaatccagagactggcatctgattttctttcgaattatatatttttgaccgtgggtcgt
gttggttcaagcaccgatttgattgtccaacgggtggaatttgttcaagaagttgacaag
agaagccatcttatggaccttcttcatgctcagaaggaaaatgatactcatggcaagcaa
gctcttacattagtttttgttgagacaaaaaagggagccgattcacttgaatactggttg
tatagtaatgggtttcctgctactacgatccatggtgatagaacacagccggaaagggag
caagcactgaaatcgttcaagagcggaaaaacaccgattttagttgcaaccgatgtggca
gcacgtggtcttgatattccacttgttgcccatgttgtgaactttgaccttcctaatgat
atcgatgactacgtgcacagaataggacgaacagggcgagccgggaagacaggattagca
acagctttctttaacgagaacaatgtgtcactagcaaaatcactagctgacttgatgcag
gaagctaatcaagaggtacctgcatggcttactcgatatgccagccgggtgtcatacggt
ggaggcaagaacaaacggggaggaggacgttttggtggccgtgattttcggaaggataac
tcctatagcggtggaggtggatatggaagctatggtggtggttatggtggcggcaatagt
ggaggtggatatggcgggggctatggaggtggtaacagtggaggtggatatggtggtggc
tatggtggtggtagtggcggtgcacctagtgcttgggattag
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