Erigeron canadensis (horseweed): 122602787
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Entry
122602787 CDS
T07610
Name
(RefSeq) probable cyclic nucleotide-gated ion channel 20, chloroplastic isoform X1
KO
K05391
cyclic nucleotide gated channel, plant
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
122602787
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ecad04040
]
122602787
Ion channels [BR:
ecad04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
122602787
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GFIT
Motif
Pfam:
Ion_trans
Ion_trans_2
Motif
Other DBs
NCBI-GeneID:
122602787
NCBI-ProteinID:
XP_043631318
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Position
6:6480544..6489247
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AA seq
740 aa
AA seq
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MDDTGKDDVPILSGRNSQSVRHDRRVSHMNRSVTISIPMTSRESSGETNRVSFSGPLRSD
KKAQQEQAEQEKTKSLNHQWGVNDTVAKNEHLYRSGQLGMCDDPYCTTCPTSYTNKGHLS
TRLSHGFDHRKLVYGGAKGWYQRAQEKLSLIKHFTCGVMNPHNKAVQQWNQFIVISCLFA
IFIDPLFFFLLSTNEEHKCIVINWPMTKAIVVFRSMTDFIYLLHMLVQFRLAFVSPESRV
VGAGDLVDHPRKIAMHYFSGFFFLDLFIVLPLPQIIVLIFLPHSIGSSGANYAKNLLRTA
ILVQYIPRLYRFLPLLAGQSPTNFIFESAWANFVINLLTFVLAGHVVGSCWYLFGLQRVN
QCLRDACRHSGFTQCKKLIDCGHGYFGSPESNSAWNDWKQHVNSSACFKEDGFPYGIYVK
AVNLTAESSIIRRYIYSFFWGFQQISTLAGNLVPSYFEWEVLFTIGIVGLGLLLFALLIG
NMQNFLQGLGRRRLEMSLRRRDFEQWMSHRHLPDNLRRKVRESERYNWAATQGVNEENLM
VTLPEDLQRDIRRHLFEFIKKVRIFAAMDEPILDAICERLRQKTYIKGGTPLYEGGIITK
MVFIVRGKMQSIGEDGNKVPLSEGDSCGEELLMWCLEQSSDNGDTRNHKKLGYRLLSKRT
VKCLTNVEAFVLRAADLEEVTTLFAGFLRSHRVQHAIRNESPYEQGKAATTIQVKWRYIK
KKLRGTNTSNRGTPHSSKFK
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggatgataccggaaaggatgatgtaccaatcttgtcaggaagaaattcgcaatctgtc
agacacgatcgaagagtttctcacatgaacagaagtgttacaatatccatcccaatgacc
tcacgtgagtcttctggtgaaacaaatcgtgtcagcttttcaggtcccctacgtagtgat
aaaaaagctcaacaagaacaagcggaacaagaaaagactaaaagtcttaaccatcaatgg
ggggttaatgatactgtagcaaaaaacgaacatttatataggtcgggacaattagggatg
tgtgatgatccttactgtacaacgtgtccaacttcatacactaacaaaggacacctgagc
acaagactctcccatgggtttgatcaccggaagcttgtgtatggaggtgcaaagggatgg
taccaacgggctcaagaaaagctatccctaatcaaacactttacatgtggggtaatgaat
ccacataacaaagctgttcagcagtggaaccaattcattgtcatttcttgcttattcgcc
attttcatagaccccttgttctttttcttgctatcaacgaatgaggagcacaagtgtatt
gtaattaattggcctatgactaaagccattgtggttttcaggagtatgacagactttata
tacctcttgcacatgcttgttcagttcagattagcattcgtttctccagaatcaagagtt
gtaggtgctggagatttggtagatcatcctaggaaaattgcgatgcattacttttctgga
ttttttttcctcgacttattcattgtcttaccccttcctcagatcattgtattaatattc
ctaccacattccattgggtcttctggagctaattatgcaaaaaatctgttgcggacagcg
attctagttcagtacattcctaggttataccgatttttgcctctccttgcaggccagtct
ccaactaatttcatatttgaatcagcatgggccaactttgtcatcaatcttctgaccttt
gtcttggctggtcatgttgttgggtcatgctggtatctctttgggttacagagggttaat
cagtgccttcgagatgcttgtcgtcattctggatttacgcaatgcaagaagctcatagat
tgtgggcatggatattttgggagccctgaatcaaattcagcatggaatgactggaagcaa
catgtaaattcctctgcttgctttaaggaggacggtttcccctatggaatttacgtcaaa
gctgtcaatctcacagccgaaagtagcataatcagaagatatatctactcttttttctgg
ggatttcagcaaatcagcacactggctggcaatctagttccaagttattttgaatgggaa
gttctctttaccattggaattgttggacttggacttctactttttgctcttcttattggg
aacatgcagaactttcttcaaggtcttggacgcaggcgactagaaatgtcactaagacgg
cgtgattttgagcaatggatgagccacagacacttgccagacaacttacggagaaaagtt
cgagagtcagagcgatataactgggctgctacccaaggggttaatgaagaaaatctaatg
gtaactttgcctgaagacctgcaaagagatatacgccgccacctatttgagtttatcaag
aaagtacgcatttttgcggcaatggatgaaccaatcttagatgcaatatgtgaaaggttg
aggcaaaagacatatattaaaggaggaacacctttatatgaaggagggattattacgaaa
atggtatttattgtaagaggaaagatgcagagcataggagaagatgggaataaagttcca
ttgtcagagggagactcatgtggtgaagaacttctcatgtggtgccttgaacaatcctct
gataatggagatacaagaaaccataaaaaattaggatatagactgctcagcaaaaggacg
gtgaaatgcttaacaaatgtggaggcatttgttctaagggctgcggatctagaagaagtc
accaccctttttgcaggattcttaaggagtcatcgtgttcagcatgccataaggaatgaa
tctccatacgagcaaggtaaagcagcaaccactatccaggtgaagtggagatacattaag
aagaagctacgcggtacaaacacctcaaatcgtggtactcctcattcctcaaagttcaag
tag
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