Erigeron canadensis (horseweed): 122602911
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Entry
122602911 CDS
T07610
Name
(RefSeq) splicing factor-like protein 1
KO
K13095
splicing factor 1
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122602911
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ecad03041
]
122602911
Spliceosome [BR:
ecad03041
]
Complex A
Other components
Complex A specific factors
122602911
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF1-HH
KH-I_KHDC4-BBP
RRM_1
KH_1
KH_12
zf-CCHC
RRM_5
KH_PNO1_2nd
PHD_4
RapA_C
zf-CCHC_2
Motif
Other DBs
NCBI-GeneID:
122602911
NCBI-ProteinID:
XP_043631458
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All DBs
Position
6:42821697..42825534
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AA seq
705 aa
AA seq
DB search
MDTIVNHTSETLDSAGPDPANGQPDSLSKNPSIQKPLLSGNGLTNSTEKDVASGGDEDET
SSIRKRKKKSRWDPPPTEDNNGTETTTRKRKSRWSDDVPVLPNNNNGLLNNPMMIQLPDF
MKDFTAGIELDPEIQVLNTRLLEISRKFQSGLPLDDRPEGARSPSPEPVYDNMGIRINTR
EYRARERLNKERQEIISQILKRNPSFKPPADYRPPKVHKKLYIPMKEYPGYNFIGLIIGP
RGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEADTQEAVDAA
AGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQFACPSRGSTFK
SDVLCKICGDGGHPTIDCPVKGSTGKKMDDEYQNFLAELGGTVPESLIKSSSSTLALGPG
SSGTNPALTGASAATSVLKPSLKDYDETNLYIGYLPPTLDDDTLIQLFSPFGEIVMAKVI
KDRITGLSKGYGFVKYSNVQQANTAIASMNGHHLDGRTIAVRVAGKPPQPTVPPGPPAPP
AASAPIAGTPPGAYSANPVPWGPPPNYAPYPPPPPGSVMYPPVISQPLPPPYGVQYPTSV
SSVGTSLAAPSGDMYTTGVPPSVQHVYPSATYGAYAPYYGVPPSHAPTPPPTNINMPQST
VDHSQIIANAPWASNHAVPPPPTIQTETNASTADTEFEKFMAETK
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atggataccatcgttaaccatacatctgaaaccctagattctgcgggtccggatcctgca
aacggtcaacccgatagcctctcaaaaaacccgtcgattcagaagccattattatcagga
aacggtttgacaaacagcaccgaaaaggatgtcgcttcaggtggcgatgaagacgaaaca
agtagtatcagaaaacgtaagaaaaaaagcaggtgggacccacctccgacagaagacaat
aacgggaccgaaacgacaaccagaaagaggaaatcgagatggtcagacgatgttcctgtg
ttacctaataataataatggtttgcttaataatccaatgatgattcaactccctgatttc
atgaaagatttcactgcaggtatcgaactcgatcccgaaatacaagtacttaatactagg
ctgttagaaattagtaggaagtttcaatctggtttgcctttagatgatagacctgaaggt
gctagatcaccttctcctgagcctgtttatgataacatgggtattcgtattaatactcga
gagtatcgagctagggaacgtttgaataaggaacgacaagagattatttctcagattttg
aaaaggaatccgtcttttaagcctcctgcggattataggccgcctaaggttcataagaag
ctttatattcctatgaaggagtaccctggttataattttatcggacttattattgggccg
cgtgggaatacgcagaagaggatggaaaaggagacgggcgcgaaaattgtgattagaggt
aaagggtctgtgaaagaagggaggctacagcagaaacgtgatttgaaacctgacccgtct
gagaacgaggatttgcatgttttggttgaggctgatacgcaggaagcggttgatgctgct
gctggtatggtggagaagcttttgcagccggtcgatgaagtgcttaatgaacataagagg
cagcagcttcgggagcttgctgcgcttaatgggactatcagggacgaagagtattgtagg
ttgtgtggtgagcctggacaccgacagtttgcttgtccgtctagaggttcgacttttaaa
agtgatgttttgtgtaaaatctgcggggatggtgggcatccgactattgattgtccggtt
aaagggtcgactggtaagaagatggatgacgagtatcagaatttcttggctgagttggga
gggacggttcctgaatcattgatcaagtcaagctcttcaactcttgctcttggcccgggt
agttcaggaaccaatcctgctttgacaggtgcaagtgccgcgacaagtgtgctgaaacct
tcgttgaaggattatgatgaaacgaatttgtatattgggtacttgccacctactttagat
gatgatacgttgattcaattgttttcaccttttggtgagattgtgatggctaaggttatt
aaggatcgtatcacggggttaagtaaaggatacggttttgtgaaatattcaaatgttcaa
caagccaatactgctattgcttccatgaatggtcatcatctagatgggagaacaattgct
gttagagttgccggaaagccccctcaaccaacagttccaccaggtcctcccgcacctcca
gctgctagtgctcctattgctggtacacccccgggagcatatagtgccaatccggttcct
tggggtccacctcctaattatgcgccatacccccctccaccacccggttccgtcatgtac
cctcctgtcattagtcagccattaccacccccttatggggtgcaataccctacatcagta
tcatctgttggcacttcattagccgctccttctggtgatatgtacactaccggagttcca
ccaagtgttcaacatgtgtacccatcagctacatatggtgcatatgcaccatattatggt
gtacctccttctcatgcacctactccccctcctactaatatcaatatgcctcaatcaacg
gttgaccattcgcagatcattgcaaatgctccatgggcatcaaatcatgctgttcctcct
ccgccgaccatacaaactgagacaaatgcatccaccgcagatactgaatttgagaaattc
atggcagagacaaaatga
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