Erigeron canadensis (horseweed): 122602947
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Entry
122602947 CDS
T07610
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
122602947
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122602947
03009 Ribosome biogenesis [BR:
ecad03009
]
122602947
04131 Membrane trafficking [BR:
ecad04131
]
122602947
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ecad04147
]
122602947
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
122602947
Ribosome biogenesis [BR:
ecad03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
122602947
Membrane trafficking [BR:
ecad04131
]
SNARE
SNARE associated proteins
Others
122602947
Autophagy
Aggrephagy
Other aggrephagy associated proteins
122602947
Exosome [BR:
ecad04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
122602947
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_2
AAA_5
AAA_33
AAA_22
AAA_14
TIP49
NPHP3_N
RNA_helicase
AAA_17
Mg_chelatase
nSTAND3
AAA_28
AAA_18
Parvo_NS1
ATPase_2
IstB_IS21
ABC_tran
AAA_lid_PRS2_C
AAA_7
Viral_helicase1
NACHT
NB-ARC
AAA_24
Vps4_C
TsaE
Zeta_toxin
DUF815
ResIII
Molydop_binding
Motif
Other DBs
NCBI-GeneID:
122602947
NCBI-ProteinID:
XP_043631495
LinkDB
All DBs
Position
6:complement(37356564..37359763)
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AA seq
807 aa
AA seq
DB search
MTDQPESSSSDPKGTKRDFSTAILERKKAANRLVVDEAINDDNSVVSMHPETMEKLQLFR
GDTILLKGKKRKDTICIALADDTCEEPKIRMNKVVRSNLRVRLGDVISVHQCADVKYGKR
VHILPIDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDFFLVRGGMRSVEFKVIETEPAEY
CVVAPDTEIFCEGEPVKREDEDKLDEIGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIG
VKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKMAGESESNLRKAFEEAE
KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID
AALRRFGRFDREIDIGVPDEVGRLEVLRIHTRNMKLAENVNLEKVGKETHGYVGADLAAL
CTEAALQCIREKMDVIDLEDESIDAEILNSMAVTDEHFQTALGTSNPSALRETVVEVPNV
SWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMAPSKGVLFYGPPGCGKTLLAKAIASE
CQANFISIKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSQGDAG
GAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRY
QIFKSALRKSPVSKDVDLRALAQYTQGFSGADITEICQRACKYAIRENIEKDIEKEKRIS
ENPEAMEEDVEDEVAEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGIGSEFRF
SETSGQAAASDPFAAPAGAADEDDLYS
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atgactgatcaacccgaatcatcatcgtccgatcctaagggaactaaacgtgattttagt
actgcaatcttggaacgaaaaaaagctgcaaatcgtcttgttgttgatgaagcaatcaac
gatgacaactccgttgtttctatgcaccctgaaaccatggaaaaacttcaactttttaga
ggcgatactatcttactcaagggtaagaaaagaaaagataccatatgtatagcacttgct
gatgatacatgtgaagaacctaagattaggatgaataaggttgtccggtctaacctacgt
gttcgccttggtgacgtcatctctgttcatcaatgtgctgatgttaaatatggtaaacgt
gttcatattttaccaattgatgataccattgaaggcgttaccgggaatcttttcgacgcc
taccttaaaccgtattttcttgaagcgtatcgtcctgttaggaaaggtgatttcttttta
gtgaggggagggatgaggagtgttgagtttaaggttattgagaccgaacccgcggagtat
tgtgtggtggcccctgatactgagatattttgtgagggtgagcctgtgaagagggaggat
gaggataagttagatgagattggttatgatgacgttggtggtgttcgtaaacaaatggcg
cagattcgtgagttggtggagttgcctttaaggcacccacagttgtttaagtctattggt
gttaagccgccaaagggtattctgctttacgggcctcctggttccggaaagactttgatt
gctcgggctgttgccaacgagactggtgctttcttcttttgtattaatgggccagagatt
atgtctaagatggccggtgagagtgagagcaaccttaggaaagcttttgaggaagcagag
aaaaacgcaccgtcgattatctttattgatgagattgattcaattgctcccaagcgtgaa
aagacacatggtgaggttgagaggaggattgtttcccagctgttgactcttatggatggg
ctgaaatcgcgtgcccatgttatagttatgggtgcaactaatcgtccgaatagtattgat
gctgccctgaggaggtttggtaggtttgacagggaaattgatatcggtgttcctgatgaa
gtaggccgtctcgaggttcttagaatacatactaggaacatgaagctcgctgagaatgtt
aatttggagaaggttggtaaagagacacatggatatgttggtgctgatttggctgcttta
tgtactgaggctgcacttcagtgcattagagagaagatggatgtgattgatttggaagat
gaatcaattgatgctgagattctgaattccatggcagtgacggatgagcactttcagacc
gcccttggcactagcaatccatctgctcttcgtgagaccgttgtggaagtgcccaatgtc
agctgggaagacattggtggtctcgataatgtcaaaagagagctgcaggagactgttcaa
tatccagtggaacatcccgagaaatttgagaagtttggcatggccccatccaaaggggtt
ttgttctatggtccacctggatgtggtaaaactcttcttgccaaggctatcgctagtgaa
tgccaggccaacttcatcagcatcaagggtccagagttgctcactatgtggttcggtgaa
agtgaagccaatgttcgtgaaatatttgacaaggctcgtggatctgctccatgcgtcctc
tttttcgatgaattggattccattgctacccagagaggaagcagtcagggtgatgctgga
ggtgcagctgatagagttctgaaccaacttttgactgaaatggacggaatgtctgccaag
aaaaccgtcttcatcattggtgcaaccaacaggcctgatataattgatcctgcactttta
aggcctggccgtcttgaccagttgatatacattcctctcccagatgaggagtcccgctat
cagatcttcaaatctgctttaaggaagtcccctgtatctaaagatgttgacctacgagct
cttgctcagtacacccagggtttcagtggggctgatatcactgaaatctgccagcgggct
tgcaagtatgctattcgtgagaacatagagaaggatattgagaaggaaaagagaatcagt
gagaatccggaggcaatggaggaggatgtggaagatgaggtagccgagatcaaggctgct
cacttcgaagaatccatgaaatttgctcgaaggagtgttagtgatgctgacatccgcaaa
taccaggcgtttgctcaaacactacagcagtcgagggggatcggttctgagttcaggttc
tctgagactagcggtcaagctgctgcaagtgatccttttgctgcccctgctggtgcagct
gacgaagatgacctttatagttga
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