KEGG   Erigeron canadensis (horseweed): 122602947
Entry
122602947         CDS       T07610                                 
Name
(RefSeq) cell division cycle protein 48 homolog
  KO
K13525  transitional endoplasmic reticulum ATPase
Organism
ecad  Erigeron canadensis (horseweed)
Pathway
ecad04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:ecad00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    122602947
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ecad03019]
    122602947
   03009 Ribosome biogenesis [BR:ecad03009]
    122602947
   04131 Membrane trafficking [BR:ecad04131]
    122602947
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ecad04147]
    122602947
Messenger RNA biogenesis [BR:ecad03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     122602947
Ribosome biogenesis [BR:ecad03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    122602947
Membrane trafficking [BR:ecad04131]
 SNARE
  SNARE associated proteins
   Others
    122602947
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    122602947
Exosome [BR:ecad04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   122602947
SSDB
Motif
Pfam: AAA AAA_lid_3 CDC48_N RuvB_N AAA_16 CDC48_2 AAA_2 AAA_5 AAA_33 AAA_22 AAA_14 TIP49 NPHP3_N RNA_helicase AAA_17 Mg_chelatase nSTAND3 AAA_28 AAA_18 Parvo_NS1 ATPase_2 IstB_IS21 ABC_tran AAA_lid_PRS2_C AAA_7 Viral_helicase1 NACHT NB-ARC AAA_24 Vps4_C TsaE Zeta_toxin DUF815 ResIII Molydop_binding
Other DBs
NCBI-GeneID: 122602947
NCBI-ProteinID: XP_043631495
LinkDB
Position
6:complement(37356564..37359763)
AA seq 807 aa
MTDQPESSSSDPKGTKRDFSTAILERKKAANRLVVDEAINDDNSVVSMHPETMEKLQLFR
GDTILLKGKKRKDTICIALADDTCEEPKIRMNKVVRSNLRVRLGDVISVHQCADVKYGKR
VHILPIDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDFFLVRGGMRSVEFKVIETEPAEY
CVVAPDTEIFCEGEPVKREDEDKLDEIGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIG
VKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKMAGESESNLRKAFEEAE
KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID
AALRRFGRFDREIDIGVPDEVGRLEVLRIHTRNMKLAENVNLEKVGKETHGYVGADLAAL
CTEAALQCIREKMDVIDLEDESIDAEILNSMAVTDEHFQTALGTSNPSALRETVVEVPNV
SWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMAPSKGVLFYGPPGCGKTLLAKAIASE
CQANFISIKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSQGDAG
GAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRY
QIFKSALRKSPVSKDVDLRALAQYTQGFSGADITEICQRACKYAIRENIEKDIEKEKRIS
ENPEAMEEDVEDEVAEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGIGSEFRF
SETSGQAAASDPFAAPAGAADEDDLYS
NT seq 2424 nt   +upstreamnt  +downstreamnt
atgactgatcaacccgaatcatcatcgtccgatcctaagggaactaaacgtgattttagt
actgcaatcttggaacgaaaaaaagctgcaaatcgtcttgttgttgatgaagcaatcaac
gatgacaactccgttgtttctatgcaccctgaaaccatggaaaaacttcaactttttaga
ggcgatactatcttactcaagggtaagaaaagaaaagataccatatgtatagcacttgct
gatgatacatgtgaagaacctaagattaggatgaataaggttgtccggtctaacctacgt
gttcgccttggtgacgtcatctctgttcatcaatgtgctgatgttaaatatggtaaacgt
gttcatattttaccaattgatgataccattgaaggcgttaccgggaatcttttcgacgcc
taccttaaaccgtattttcttgaagcgtatcgtcctgttaggaaaggtgatttcttttta
gtgaggggagggatgaggagtgttgagtttaaggttattgagaccgaacccgcggagtat
tgtgtggtggcccctgatactgagatattttgtgagggtgagcctgtgaagagggaggat
gaggataagttagatgagattggttatgatgacgttggtggtgttcgtaaacaaatggcg
cagattcgtgagttggtggagttgcctttaaggcacccacagttgtttaagtctattggt
gttaagccgccaaagggtattctgctttacgggcctcctggttccggaaagactttgatt
gctcgggctgttgccaacgagactggtgctttcttcttttgtattaatgggccagagatt
atgtctaagatggccggtgagagtgagagcaaccttaggaaagcttttgaggaagcagag
aaaaacgcaccgtcgattatctttattgatgagattgattcaattgctcccaagcgtgaa
aagacacatggtgaggttgagaggaggattgtttcccagctgttgactcttatggatggg
ctgaaatcgcgtgcccatgttatagttatgggtgcaactaatcgtccgaatagtattgat
gctgccctgaggaggtttggtaggtttgacagggaaattgatatcggtgttcctgatgaa
gtaggccgtctcgaggttcttagaatacatactaggaacatgaagctcgctgagaatgtt
aatttggagaaggttggtaaagagacacatggatatgttggtgctgatttggctgcttta
tgtactgaggctgcacttcagtgcattagagagaagatggatgtgattgatttggaagat
gaatcaattgatgctgagattctgaattccatggcagtgacggatgagcactttcagacc
gcccttggcactagcaatccatctgctcttcgtgagaccgttgtggaagtgcccaatgtc
agctgggaagacattggtggtctcgataatgtcaaaagagagctgcaggagactgttcaa
tatccagtggaacatcccgagaaatttgagaagtttggcatggccccatccaaaggggtt
ttgttctatggtccacctggatgtggtaaaactcttcttgccaaggctatcgctagtgaa
tgccaggccaacttcatcagcatcaagggtccagagttgctcactatgtggttcggtgaa
agtgaagccaatgttcgtgaaatatttgacaaggctcgtggatctgctccatgcgtcctc
tttttcgatgaattggattccattgctacccagagaggaagcagtcagggtgatgctgga
ggtgcagctgatagagttctgaaccaacttttgactgaaatggacggaatgtctgccaag
aaaaccgtcttcatcattggtgcaaccaacaggcctgatataattgatcctgcactttta
aggcctggccgtcttgaccagttgatatacattcctctcccagatgaggagtcccgctat
cagatcttcaaatctgctttaaggaagtcccctgtatctaaagatgttgacctacgagct
cttgctcagtacacccagggtttcagtggggctgatatcactgaaatctgccagcgggct
tgcaagtatgctattcgtgagaacatagagaaggatattgagaaggaaaagagaatcagt
gagaatccggaggcaatggaggaggatgtggaagatgaggtagccgagatcaaggctgct
cacttcgaagaatccatgaaatttgctcgaaggagtgttagtgatgctgacatccgcaaa
taccaggcgtttgctcaaacactacagcagtcgagggggatcggttctgagttcaggttc
tctgagactagcggtcaagctgctgcaagtgatccttttgctgcccctgctggtgcagct
gacgaagatgacctttatagttga

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