Erigeron canadensis (horseweed): 122602960
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Entry
122602960 CDS
T07610
Name
(RefSeq) amino acid transporter AVT1C-like
KO
K15015
solute carrier family 32 (vesicular inhibitory amino acid transporter)
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
122602960
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ecad02000
]
122602960
Transporters [BR:
ecad02000
]
Solute carrier family (SLC)
SLC32: Vesicular inhibitory amino acid transporter
122602960
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Paralog
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GFIT
Motif
Pfam:
Aa_trans
Motif
Other DBs
NCBI-GeneID:
122602960
NCBI-ProteinID:
XP_043631511
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Position
6:39140848..39146253
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AA seq
553 aa
AA seq
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MKNSESEQAFFIESDEDEEKDPSIRGEDDGNDSEFSNYSEEDDPHSHQGKPSSLNPSWPQ
SYRQSIDLYSSVPSPSLNFLGTPNLSRLGSSFLGSTLTRRQTPEILPTLGKPLLASTDNQ
QQPQERRSSHSLLPPRRGSSAKKLPHVHKSSKASHELPLSNQSSFGQSVLNGVNVLCGVG
LLSTPYAVKEGGWVGLLLLFLFGVLSFYTGILLRHCLDSQPDLATYPDIGQAAFGTTGRL
IISIILYVELYACCVEYVILESDNLSSLFPNAHLNLGGYILNAHYLFAITITIAVLPTVY
LTDMRLLSYISAGGVIASILVAICLFWVGLVDDIGFQIETTKTLNLSSFPVAIGLYGYCY
SGHAVFPNIYTSMEKRSQFPMVLLTSFGICGVLYAAVAVMGYMMFGESTESQFTLNLPTN
LVASNIAVWTTVVNPFTKYALTMSPVAMSLEELIPPGHKSCFNYSFLIRTGLVFSTLAVA
LSIPFFGLVMSLIGSLLTMLVTLILPCACYLSILRGKITRFQRSLCVLIIVVGTISSVIG
TYTSLSEIFQRLF
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgaagaattcagaatctgagcaagcttttttcattgagagtgatgaagatgaagaaaaa
gatccttccattagaggtgaagatgatgggaatgattccgagttttcgaattattcggaa
gaagatgaccctcatagtcatcagggcaagcctagctccttaaacccttcttggcctcaa
agttacaggcaatccatcgatctttacagtagtgtaccatcgccaagcttgaactttttg
gggacgcctaatttgtcgcgattaggcagttcatttcttggctcaacacttacaagaaga
caaactcctgagatacttccaactttgggcaaacctctcttggcatcaacagacaaccag
cagcagccacaagaaaggcgtagttctcattctcttctccctccacgacgaggatcatct
gccaagaagttgccacatgttcacaaatcttctaaggcttcccatgaacttccgctttca
aaccagagctcatttggtcaatctgtgcttaatggcgtaaatgttctatgtggagttgga
cttctttcaacaccatacgcggtcaaagaaggaggatgggttggacttttgttattattt
ctctttggtgtcctttctttctacactggtatcctccttcgtcattgcttggacagtcag
cctgaccttgcaacttatcctgatattggtcaagctgcctttggcaccaccggacgacta
ataatttctataattttgtatgtggagctatatgcatgttgtgttgaatatgtaatcctg
gagagtgataatctatcttctctgtttccaaatgcacatttaaatcttggaggatatata
ctcaatgcacattatttatttgcaattacgatcacaattgccgtgcttcctacagtttac
cttaccgatatgcgtcttctcagttacatctctgctggaggagttattgcatcaattctt
gtggccatttgtttgttttgggttggcttggtggatgacattggttttcagattgaaaca
acaaagacgttgaacctctccagtttcccagtggctatagggctttatggttactgttat
tcaggacatgctgtctttcctaatatatatacatcaatggaaaaaagaagtcaatttcct
atggtcctcttaactagttttggaatttgtggtgttctgtatgcggcggttgctgtaatg
ggatacatgatgtttggagaatcaacagaatctcagttcactcttaacttgccaacaaat
ttggttgcctcaaatattgctgtatggactacggtggttaatccgtttaccaaatatgct
ttgaccatgtctcccgtcgctatgagtcttgaggaattgataccaccaggccataagtct
tgttttaactattccttcctgattagaacgggtttagttttctctactttggctgtagcc
ctctccatccctttcttcggtcttgtgatgtcacttatcggatctttactgaccatgcta
gtgacattgattcttccttgtgcttgctacttgagcatcctaaggggaaagataactcgg
tttcagagatcactatgtgtattgatcatcgtggttggcactatctcttcggttattgga
acttatacgtcgctatctgaaatctttcaacgtttgttctga
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