Erigeron canadensis (horseweed): 122603133
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Entry
122603133 CDS
T07610
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122603133
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122603133
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122603133
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122603133
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
122603133
NCBI-ProteinID:
XP_043631688
LinkDB
All DBs
Position
6:21771223..21782213
Genome browser
AA seq
863 aa
AA seq
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MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALMDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNTVSELESQIDSFEAEMEGLSVKKGKARPPRLTHLESSITRHKA
HIMKLELILRLLDNDELSPEQVNDVKDFIDDYVERNQEDFDEFEDVDMLYNTLSLDMVEA
LEDLVSIVPPGLVKGVGATGAGLTMKTALSSPPVQSPVASVPEQVEDTVSQDNSSEHVPK
TPPPKSSGISSSPTTPAGSHATPVAVAASSSLPGSSSVRVVADNTGSAVPSSPINNASKE
EEAGGFPVRKSSPALSEAGLRMGRGSLTSQSSATIPISSSTSNISTNGVAPSVSEMAKRN
ILGGDERVGSSPMVNPPVSSLGNRMMLPQSVKTSDGADNGNGGEAGGLTSRVFSPSGVPG
IQWRPGSSFQSQHEGGQLRGRTEIAPDQREKFLQRFQQVQQQGQSNLLSMSPNKQFSTQQ
NPLLQQFNSQSSTVLPQGGLGGAQPAGPNTITSSQQSNSIHMQSGQQSLMSTSSKDTEIG
NAKVDEMEQQQSDDLPSDSAQSVGLTKNAATEEDSKLSYALDMQSGASGSLTESVQATRD
VDLSPGQPLQSNQSASLGVIGRRSLSDLGTIGDNLSGLAVSLGGTHDQQYNLQMLESAFY
KLPQPRDSERTKTYTPRHPAVTPQSYPQVQAPIVNNPAFWERLGSDNIGTDTLFFAFYYQ
QNAYQQYLAAKELKKQSWRYHKKYNTWFQRHEEPKFATDDYEQGTYVYFDFHIGNDEMQN
GWCQRIKTDFKFEYNFLEDELIV
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atgggagcaagtagaaagcttcaaggtgagatcgatcgagttttaaagaaagttcaagaa
ggagttgatgtttttgatagcatttggaataaggtatatgatacagataatgcaaatcaa
aaggagaagtttgaagctgatttaaagaaagaaataaagaaacttcaaagatatagagac
cagattaagacatggatacagtctagtgaaatcaaggataaaaaggttagtgcctcttat
gagcaggctttgatggatgctcgtaagctcattgagcgtgaaatggaacggttcaagatt
tgtgaaaaggaaacaaagacaaaagctttctccaaggaaggcctaggacagcagcctaaa
acggacccaaaagagaaagcgaagtcagagactagagattggttaaacaatacggtgtct
gagttggaatctcaaattgatagctttgaagctgagatggaggggctatctgttaagaaa
ggaaaagcgagacctccaagactgacacatttagagtcatcaattactcggcacaaggcc
catataatgaagctagagttgatattgaggctgttagataatgatgaactgagtcctgaa
caagtcaatgatgttaaagacttcattgacgactatgtggaacggaaccaggaagatttt
gatgaatttgaggatgttgatatgctatacaacaccttgtcactggacatggtagaggcg
ctagaagatctagtttccattgtgccaccgggcctcgtcaagggtgttggtgctactggt
gctggtctaactatgaaaactgctttgtcttcacctccagttcagtcaccggtagcttct
gtcccggagcaagtcgaggatacagtatcccaggacaatagctcagagcatgtgccaaag
accccacctccaaaaagtagtggaatctcatcttctcctacaacaccagctggcagccat
gcaacccctgttgctgttgctgcttcttcaagccttcctggttcaagttctgtcagggtc
gttgcggataacacaggctccgccgttccttcctctcccataaacaatgctagtaaggaa
gaagaggctggaggcttccctgttcgtaaatcatccccggccctcagtgaagctggatta
aggatgggtagaggcagtttgaccagtcaatcttcagctactattcccattagttcaagc
accagtaatatatctacaaatggtgttgctccttcagtttctgaaatggctaagagaaac
atattagggggtgacgaaagagttggcagtagtcccatggtgaaccctccggtttcatct
ttgggtaacagaatgatgttaccgcaaagtgttaaaaccagtgatggtgctgataatgga
aatggtggtgaggctgggggtttgacttcacgagtgttctctccttctggagttcctggc
atacagtggaggcctggaagttccttccaaagccagcatgaaggagggcagctacgtggg
agaactgaaattgcaccagatcaaagggagaaatttttacaacggttccagcaagtgcag
caacaaggtcagagtaatctccttagcatgtctcccaataagcaattctcaactcagcag
aaccctcttctgcagcagtttaattctcaaagttcaactgtgttgccacaaggtgggtta
ggtggagcgcagccagcaggtccaaacactatcacctcttcacaacaatcaaattcgatt
catatgcagtccggtcaacagtcacttatgtcgactagttctaaagatactgaaattggt
aatgcaaaagttgacgagatggagcaacaacaaagcgatgatttaccttctgattctgcc
caaagtgtcggccttaccaagaatgctgccactgaagaagattcaaagctgtcctatgca
ttagatatgcagtctggcgcatcggggtccttgacggagtctgtacaagctacacgagat
gtggatctttcacctgggcagcctttgcaatctaatcagtctgcaagtcttggtgttatt
ggtcgaagaagcctttccgatcttggtacaattggagacaaccttagtggattagctgtg
agcttagggggaactcatgatcagcaatacaacctgcagatgcttgagtctgccttttac
aaactcccccaacccagagactccgaacgaacaaagacttacactccgagacaccctgct
gtgactcctcaaagctatcctcaagtacaggctccaattgtcaataacccagctttttgg
gaacgtcttggatctgataacattggcacagacactttattttttgcattctactatcag
cagaatgcttatcaacaatatttggctgccaaagagttgaagaagcaatcatggaggtac
cataaaaagtacaatacgtggtttcaacgacatgaggaaccaaaattcgccaccgatgat
tatgaacagggaacatacgtgtactttgattttcatattggcaatgatgagatgcaaaac
ggctggtgtcaaagaataaagacggatttcaaattcgagtacaattttcttgaagatgaa
ctaatcgtgtaa
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