Erigeron canadensis (horseweed): 122603169
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Entry
122603169 CDS
T07610
Name
(RefSeq) polyribonucleotide nucleotidyltransferase 1, chloroplastic
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122603169
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122603169
03016 Transfer RNA biogenesis [BR:
ecad03016
]
122603169
Enzymes [BR:
ecad01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
122603169
Messenger RNA biogenesis [BR:
ecad03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
122603169
Transfer RNA biogenesis [BR:
ecad03016
]
Prokaryotic type
tRNA degradation factors
122603169
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
OB_RRP5_4th
DUF6293_C
Motif
Other DBs
NCBI-GeneID:
122603169
NCBI-ProteinID:
XP_043631737
LinkDB
All DBs
Position
6:complement(36489886..36500110)
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AA seq
911 aa
AA seq
DB search
MLAISSSFHGGRPLPHSTFHNNRHNKSTSVSSNFLTSAITRSNNNNNNKLNNSIRFNVRA
LIRESDSATSSPSFPNRHTVKIPVGDRYITVETGQIGRQASGSVIVRDGETIIYTSVCMS
DVPSEPSDFFPMSVNYQERFSAAGRTSGGFFKREGRTKDHEVLICRLIDRPLRPTMLKGF
YHETQILSWVLSYDGLHPPDSLAVTAAGIAVALSEVPNTNTIAGVRIGLIGDKFIVNPTT
LEMEDSKLDLLMAGSERGILMIEGYCDFLPEEKLIQAIEVGQDAVRAICKEVDNLVKKCG
KPKMLDSIKLPPPELYKHVEEIAGDELVKVLQLKSKVPRRKALSLLEEKVLSILTEEGYV
SKSETSVGNEITPDMLEDEDEEEEFVVDGEFDEGDVHIKPVYKKPVPMFYSEVDVKLVFK
SVTSKYLRKRIVEGGKRSDGRTSEEIRVIDSECGLLPRAHGSALFTRGETQSLAVVTLGD
KQMAQRIDILAGVEDVKRFYLQYSFPPSCVGEVGRIGAPSRREIGHGTLAERALEPVLPS
EEDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPLKSSIAGIAMGLVVDTEEFGG
DGTPLILSDITGSEDASGDMDFKVAGNEDGVTAFQMDIKVTGITLSTMKQALMQAKEGRK
RILAEMLKCSPPPSKKLSKHAPLILVMKVKPEKVNLIIGSGGKKVKSIIEETGVDSIDTQ
DNGIVKITARDWASLEKTKAIISNLTMVPVIGDVYRNCKITSIVPYGAFVEIVPGREGLC
HISELSPDWLSKPDDAFKVGDQVDVKLIEINEKGQLRLSRKALLPDQGTDKPNENQSTAG
ETKDSGAPQKYADKSKLRRSSSMPKDKSSEVTFSKRYVGPRKNEPKTSSSELDVASSDSG
SALVNGEAQVG
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atgctagcgattagcagtagcttccatggaggacgaccattaccacactcaacgtttcac
aataatagacacaataaatcaacttctgtctcctctaatttcctcacatcagctatcact
agaagcaataacaacaacaataataaattaaataactcaattcgcttcaatgtacgcgcc
ctaattcgcgaatcagattctgccacgtcatctccttcttttcctaaccgtcataccgtt
aaaattcccgttggagatagatacataacagttgagactggtcaaataggaagacaagct
agtggatctgttattgtaagagatggagaaacgatcatctacacgtctgtttgtatgtct
gatgttccaagcgagccttctgactttttccctatgtctgtaaattatcaagagcgtttt
tcagctgctggtagaaccagtggaggattttttaagcgggagggaaggacgaaggaccat
gaggtacttatatgtagactaattgacaggccattgaggccaaccatgctaaagggcttc
tatcatgaaactcagatactatcttgggttttgagttatgatggcctgcaccccccagat
tctctagctgttactgcagctggaattgcggtagccctctcagaagtgccaaatacaaac
actatagcaggagttcgaattggtttgattggtgataagtttattgtgaatccaacaacc
ttggagatggaagattcaaaactggacttattgatggcgggatcagaaagagggatatta
atgatagagggttactgtgactttcttcctgaagagaagttgattcaagcgatagaagtt
ggacaggatgctgtgcgagctatctgcaaagaggtggacaatttggtaaagaagtgtggg
aaacccaaaatgcttgattcaattaagttacctccacctgagctgtataaacatgttgaa
gaaattgcaggtgatgagttggtcaaagtgctacaactcaaaagcaaagtaccaagaaga
aaagccctttcattgttagaggaaaaagttcttagtatacttactgaggagggttatgta
agcaaaagtgaaacttctgttggtaatgaaataactccagacatgttggaggatgaagat
gaggaagaggaatttgtggttgatggtgaatttgatgagggtgatgttcatattaagcca
gtttataagaaaccagttcccatgttttactctgaggtagatgtgaagttggttttcaaa
agtgttacatccaaatacctgcgaaaacgcatcgtggagggaggaaaaagaagtgatggc
agaacttctgaggagatacgtgtcattgactcagaatgtgggttactacctagagcacat
ggaagtgctctttttacccgtggggaaactcagtcattggcagtggttacccttggggac
aaacaaatggcacaaagaatagacatcctggcaggtgtagaagatgtgaaaaggttctat
cttcagtattcatttccaccatcttgtgttggggaagttgggcgaattggagcacctagt
agaagagaaattggtcatggtactctggctgaaagagccctcgaacctgtgttgccttca
gaagaagattttccttatactatacgtgtggagagtaccattacagaaagtaatggatca
tcaagtatggcatcagtttgtgggggatgcctagcactgcaagatgctggagtaccatta
aagagctctattgcgggtatagcaatgggcttggttgtggacacagaggaatttggggga
gatggaaccccacttatcttatccgacatcactggctctgaggatgcttctggagatatg
gattttaaggttgctgggaatgaagatggagtaaccgcatttcaaatggatataaaggtt
actggaattactttgtcaacaatgaagcaagcattaatgcaagcaaaggaaggacgtaaa
cgtattcttgctgagatgctgaaatgctcacctcccccgtcaaagaagctttctaagcat
gctccactcattcttgttatgaaagttaagcctgagaaagtgaaccttattattggctcc
gggggtaaaaaagtcaagagtatcattgaagagactggcgtggactctatcgacacacaa
gataatggaatagtcaaaataactgcaagagattgggcaagcctagaaaagacgaaagct
atcattagtaacttgacaatggtcccagttattggtgacgtgtataggaattgcaaaatc
acatctattgttccctatggagctttcgttgagatagtaccaggccgagagggactttgt
catattagcgagttgagtccagattggctgtcaaaacccgacgatgctttcaaggttgga
gaccaggttgacgtcaagctcatagagatcaatgaaaaaggtcaacttcgtctaagccga
aaagcactccttccagatcagggcactgataaaccaaatgaaaatcagagtacagctggt
gagacgaaggatagtggagccccacaaaaatatgccgataaaagtaagcttagaagaagt
tcaagcatgccaaaggataagagctctgaagttacattttccaagaggtatgttgggccc
cgcaaaaatgagccaaaaacgagtagcagtgaattggatgttgcatccagtgacagtgga
agtgcactagttaatggagaggctcaagttggataa
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