Erigeron canadensis (horseweed): 122603203
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Entry
122603203 CDS
T07610
Name
(RefSeq) E3 ubiquitin-protein ligase SHPRH
KO
K15710
E3 ubiquitin-protein ligase SHPRH [EC:5.6.2.-
2.3.2.27
]
Organism
ecad
Erigeron canadensis (horseweed)
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ecad04121
]
122603203
Enzymes [BR:
ecad01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122603203
Ubiquitin system [BR:
ecad04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
122603203
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SHPRH_helical-1st
Helicase_C
SHPRH_helical-2nd
zf-C3HC4_2
PHD
PHD_5
zf-C3HC4
RING_XB3-XBAT31
zf-RING_2
zf-RING_UBOX
TPR_2
RNPP_C
TPR_1
TPR_12
Motif
Other DBs
NCBI-GeneID:
122603203
NCBI-ProteinID:
XP_043631781
LinkDB
All DBs
Position
6:complement(42441387..42452626)
Genome browser
AA seq
1615 aa
AA seq
DB search
MVKRKQIRPRRAGRNLDTSGVSKQGLCEAGTSQAPENELPGEDKTIYIDVDGDNWGAETH
YDISEVLLTNVHVSEEFRDKTIEEQSSCNVNDKFKLRLRLENVNELIGRVKLPGQWPVIA
ATDVYLEFVEQQELLDVDTRVMVTGNFDGPSEGVSGLAHLVNIKYMTLRPILGLTVSGSL
SSVRLRVEVQKCAFEACESLFETKRSLWKKSMMNVMAWLRPEVTTSETRYGYKVPEDMEI
DVEPDEDSAVRRKRARFDVSGFYEAIKPSKGNQMLIDDMPELLPELRPYQRRAAFWMVQR
EKGALECFAGSEPSQFISPLCTPVDLVDSCSKIYYNSFSGCLSINPENCSSYVLGGILAD
EMGLGKTIELLACVFGHRKLDTEADGVHEEMIQVAGEYKPNIKRMKRDRIECVCGAVSES
SRYIGLWVQCDVCDAWQHANCVGYSDKDGDEAHICPLCSELIEATSSPVATGATLVVCPA
PILPQWHAEITRHTSPGSLKVHVYEGVRTTPSSSKPVTNIDELLSADIVLTTYDVLKEDL
SHDADRHEGDRHLMRYQKRYPVIPTLLTKIFWWRLCLDEAQMVESNTTAATEMAMRLHAM
HRWCITGTPIQRKLDDLYGLLRFLQSSPYNVLRWWIHVIRDPYERGDVGAVEYTHNLFRQ
IMWRSSKSHVSDELLLPPQEECLSWLSLTPIEEHFYHRQHETCLTYAREVIQSFNTNVST
KQASDSVLTNVEAAKLLNSLLKLRQACCHPQVGSSGLRSLQQSPMTMEEILMVLVGKTKV
EGEEALRKLVVALNGLAGIAIIKQDFRQAISLYKEALELAEEHSEDFRVDPLLNIHIHYN
LAEILPLTDNLNTGCSGPGRCEGNGCKTCDVKSDDQCDILNGSNDEENIVHRPHSMLSRC
TSYQSLQMTCNNLKQKFLSVFNTRLAVAQLEFRKSYELVGNAHNDRRDQHTTWWAEALHL
IEQNKDFSSDFIRKVGDAVSGTLNTSKTSRLAACFRSITALKYYIQTGLDSLEDSRKTLL
ERLLQVDQNMDNPLPDDVERVRYCPNCKVNGDGRICVHCELDELFQAYEARLFRVNKGHD
GGVITTAEETVDLRKKVSALNRFYRTLSQPGKALSQSSVEKENEGKKRDVGEKITVSKSP
SELEVVLGIIKSYSKALLDSEATSAAKKHLSLLEGMRKEYAQARSLAIAQAQVLNAHDEL
NMATSRLRLREIEDDTSIDALSLEELETASVENSGEKFFALSSLSRIKGQLRYLKGLVKR
KQNSNSEGKCVPSEAQPLTNSHANSLGKKENEKLVQLEDACPVCQERLSNQKMVFQCGHI
TCCKCFLGISERRTHYPGKSREKWVMCPTCRQHTEYVNVAYVDDRQNESPNVSAQTSSST
EDSVNVNGSYSTKIVAVTRRILWIGSTNPEAKILVFSSWNDVLDVLEHAFTANDISFVRM
KGGRRAHDAISQFKGEKVGNVMNKKNRRKESNSVQVLLILIQHGANGLNLLEAEHVILVE
PLLNPAAEAQAISRVHRIGQTKKTLVHRFIVKDTVEESLYKLNKSRDSCSFISGNKKNQD
QPVFTLKDVESLFKVAPSTLEQQTKEESTLNLMHLPPGVAAAIAAERRLMEQTSS
NT seq
4848 nt
NT seq
+upstream
nt +downstream
nt
atggttaaaagaaagcagattcgacctcgtagggcagggcgtaatctcgacactagcggt
gtttctaaacaaggattgtgtgaggcaggcacatcccaggcgccagaaaacgagttacct
ggtgaggataaaacgatatacattgatgtggatggggataactggggtgcggaaacgcat
tacgatatttcagaagtgctgttaacgaatgtacatgtaagtgaagagtttcgggataag
acaattgaggaacaaagttcttgtaatgtaaatgacaagtttaagttaaggttacggttg
gaaaacgtaaatgaacttattgggagagtgaaattaccgggtcagtggcctgttatcgct
gctactgatgtgtatttagaattcgttgaacagcaagaattgttggatgtagatacgcgt
gtgatggtaactgggaattttgatgggcccagtgaaggtgtttccgggcttgctcacttg
gtaaatataaagtatatgactttgaggcctattttggggctaactgtttcggggagcttg
tcttctgttagattgagagtagaggtacagaagtgtgcgtttgaggcctgtgagtcactt
tttgagactaagaggtcgttatggaaaaaaagtatgatgaatgtcatggcttggctacgt
cctgaagtaacaacctcggagactagatatggatataaggtgcctgaagacatggagatt
gatgtagaaccagatgaagattcggctgttcgcaggaaacgagctaggtttgacgtttct
ggtttttatgaagctataaaaccctcaaagggtaaccagatgctaatcgatgatatgccc
gagttgcttcctgagctaagaccttatcaacgacgggcagctttctggatggttcaacga
gaaaaaggagctttagaatgctttgcaggaagtgaaccaagtcaatttatctcaccatta
tgcacgccggtggatttagtcgattcgtgctcaaaaatatattacaattcatttagcgga
tgtctttcaatcaatcctgagaactgttcttcttatgttcttggtggcattcttgcagat
gagatgggtttgggaaaaactattgagctacttgcatgtgtattcggacatagaaaattg
gacactgaagctgatggtgtacatgaagagatgatacaagttgctggagaatacaaacct
aacatcaaaagaatgaaaagagatcgtattgagtgtgtttgtggggctgtaagtgaaagc
tccaggtatataggtttgtgggtacagtgtgatgtttgtgatgcttggcaacatgcaaat
tgtgttggctattcagacaaagacggtgacgaggctcatatttgtccgctttgctcagaa
ctgattgaagcaaccagttcgccggttgctactggtgcaactcttgtcgtgtgcccagca
cctatattgcctcagtggcatgctgaaattactcgtcatacaagtccaggttctctgaaa
gtacatgtttatgaaggtgttagaaccactccatcttccagtaaacctgttacaaatatt
gatgaactgcttagtgccgacattgtcttaacaacatatgatgtgcttaaagaagactta
tctcatgatgctgataggcatgagggggatcgccatcttatgagataccagaaaaggtac
cctgttataccaactcttctcactaaaatattttggtggaggctttgtttggatgaggcc
caaatggtggagagtaatactactgctgcaacagaaatggctatgcgattacatgctatg
catcgttggtgtattacaggaactcctatacagcgtaagctagatgacttgtatgggctg
ttaagatttctccaaagtagcccatacaatgtactcaggtggtggattcatgtcattaga
gatccttatgagcggggagatgtgggggctgtagaatatactcataatctcttcaggcaa
ataatgtggcgatcctcaaagtcacatgtttctgatgagttgctgctgcctccacaagaa
gaatgcctttcttggctatctctcacaccaattgaagaacacttttatcacaggcaacat
gaaacttgtctgacctatgctagggaagttattcagagtttcaatactaatgtttccaca
aaacaagcttcagattccgtccttaccaatgtggaggctgcaaagcttttgaactccctc
ttgaagctacgtcaagcttgctgtcatccccaagtaggaagttctgggctacgttctcta
cagcaatctcccatgacaatggaggagatactaatggttcttgttggtaagaccaaggtg
gaaggggaggaagccctaaggaagctagttgtggcgttgaatggacttgcagggatagct
ataattaaacaagattttcgtcaagctatttcattatataaagaagctttggagttagcc
gaagagcattcagaagattttagggtggaccctctgttaaacattcatatacattataat
cttgctgagatactccctttgacggataacctgaatactggatgttctggtcctggaaga
tgtgaaggtaacggctgcaagacgtgtgatgtcaaatcagatgatcaatgtgatatctta
aatgggtcaaatgatgaggaaaatattgtgcataggccacattccatgttatccaggtgt
accagctaccaatctttgcagatgacatgcaacaatttaaagcagaagttcttgtccgtg
tttaacacaagattggctgttgctcagctggaatttaggaaatcttatgagctggttggt
aatgcacataatgatagaagagaccagcatactacttggtgggcagaagccctgcatctt
attgagcaaaacaaggatttttcatctgattttattagaaaagtaggggatgctgtctct
gggactcttaacacttcaaaaacgtcaagacttgcagcatgctttaggagcataactgca
ctcaagtattatattcagactggcctggattcattggaagactctcgaaaaactctgctg
gagagacttctgcaagttgaccagaatatggataatccactaccagatgatgtagaacga
gtgagatactgtccaaattgtaaagttaatggagacggccgcatctgtgtgcactgtgaa
ctggatgaattatttcaggcttatgaggctaggctgtttcgagtaaacaaaggacatgat
ggaggggtgattacaacagctgaggagactgtagatttacggaagaaagtgtcggcttta
aatcgtttttatcggactttgtcacaacctggcaaagctttatcacaatcaagtgtggag
aaagaaaatgaagggaagaaaagggatgttggggagaagatcacggtttctaaatctcct
tcagagctggaagttgttcttgggattataaagagctattcgaaggccttattagattca
gaagcaacgtcagcagccaagaagcatctttctcttcttgagggaatgcgaaaggagtac
gctcaagcaagatccctcgcaattgcccaagctcaggttcttaatgctcatgatgagtta
aatatggcaacctcacgattacggctgagagaaattgaagatgatacatctattgatgca
ttaagtctagaagagttagaaacagcaagcgttgaaaattctggtgaaaagttttttgcg
ttatcctcattatcacgcattaaagggcagcttcgttatttgaagggtttggtaaagcgt
aaacaaaattccaattcagaaggcaaatgtgttccatctgaggctcaacctttgacaaat
tctcatgctaactcgcttggaaagaaagagaatgaaaaattagtccagttagaggatgca
tgtccggtttgtcaagaaagactaagcaatcaaaagatggtttttcagtgtggacatatt
acgtgctgtaaatgtttccttggaattagtgagaggagaactcattatcctgggaagtct
cgtgagaaatgggtgatgtgcccaacatgcagacagcatacagaatatgtgaatgttgct
tatgttgatgataggcaaaatgagtcacctaatgtttctgctcaaacttctagcagcaca
gaagattctgtgaatgtcaatggttcttatagcacaaagattgtagcagttacaaggaga
atactgtggattggttctacaaacccagaagccaagattcttgttttctccagttggaac
gatgttcttgatgtactggagcatgcttttaccgctaatgatattagttttgttagaatg
aaaggagggaggagagcgcatgatgctatcagtcaatttaaaggtgagaaagttgggaat
gtcatgaataagaaaaacagacggaaagaatcaaattctgttcaggtgctgctaatcttg
attcagcatggggccaatgggcttaacctgttggaagcggaacatgttattcttgtagag
ccgctactcaatcctgccgccgaggcacaagcaatcagcagggtgcatcgtattggacaa
accaaaaagacactggtccatcgtttcatagtgaaagacaccgttgaagagagcttatat
aaactaaataaaagcagggatagttgttcgtttataagtgggaacaaaaagaaccaagat
cagcccgtcttcacgctcaaagatgtggagtctctgtttaaagttgctccatccacacta
gaacaacaaactaaagaagaatcgactttaaatttaatgcatttgccaccaggtgtagca
gctgcaatagctgctgagaggaggctcatggagcaaactagtagttga
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