Erigeron canadensis (horseweed): 122603249
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Entry
122603249 CDS
T07610
Name
(RefSeq) syndetin
KO
K23288
syndetin
Organism
ecad
Erigeron canadensis (horseweed)
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ecad04131
]
122603249
Membrane trafficking [BR:
ecad04131
]
Protein recycling
Others
EARP complex
122603249
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
DMP19
Motif
Other DBs
NCBI-GeneID:
122603249
NCBI-ProteinID:
XP_043631842
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All DBs
Position
6:35070096..35083641
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AA seq
1086 aa
AA seq
DB search
MQPNSYSTIQSPFALIPLALSNHGDFSPQGFELSRFFFLGSLLLSPASATGENDDGMDFS
KVGEKFLSSVRSARSLGFLPATSDRPEVPERAAAAAAIARALASIPPHQRQNISSSSEEL
SSMYGSEPGGEVLEKLEEEFYEEEFDPVRHTLENIPSEESDLAYFEGKAALRLLQLDKVT
ESLSRQVMEHHEVMVKGMDLVGELEKDLKVANVICMNGRRHLTSSRNEVSRDLVVNTSSR
RKQTLLDMLQVLATLLRAKDMQVELETLVNEENFFKAFQVLSEYLQLLDSLSELFAIQEM
SRGVEIWLGRTLQKLDSLLLGVCQDFKETSFLTVVDAYALIGDVSGLAEKIQSFFMQEVI
SETHAVLKNILLEDPEAADIQSTRLTYSDLCTRIPESEFRQCLLATLAALFKLMGSYHAI
MSFHSECKISMGQLLPDSQNQGDETGSSKNVQHSDESESGSFVPGDPSGSESRDDGSGAS
SSGSPWFQLRSDATIVVSQTLQRGRKNLWQLTMSRLSVLLSSSAVSSTSIHQFLKIYEDL
NIFILAGEAFCGSEAVEFRQKVRVICENYYLAIHRQNIHALKMVLEKESWVTMPPETIQV
VSFAGLIGDGAALLSQTGHKSPASVKTGTKQGGFSHWIRSGNPFFLNHDPKEYDGSPREK
INGVFHKNDSSHNSDTNHTNGHPDTSEDENEDLLADFIDEDSQLPSRIAKPKHLKISSVS
WMDEDMTAHTGSSVCVLRLMDKYARLMQRLEIINVEFFKGICQLFGIFFYYVFESFGHQN
VNPSGKTNSDALNYRLKTAVSRIMQDCNQWIKPPSLSGSYSSHATTNMQFSHMDITPTPP
SSNSSHLSSTTLGLKERCAGADTISLVARLLYKSKAHLQSVLLTNNATVVEEFYLQLVDS
VPDLIEQIYRTTAKSLLHINGYADRVASAKWEVKELGMEHNGYVDLLLGEFKHYKTRLAH
GGIRTEVQDLLTEYGLENISDVLVEGLSRVKRCSDEGRALMLLDLQVLINGLQHFVTVNV
KPKLQTVETFIKAYYLPETEYVHWARAHPEYTKSQLAGLINLVATMQGWKRKSRLEVLEK
IGAAGM
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atgcagccaaacagttattcaacaatacaatctccatttgctttaattccacttgcttta
tcaaatcacggagatttctctcctcaaggtttcgaactttctaggtttttctttttaggt
tctcttcttttatctccagcttccgccaccggcgaaaacgacgacggtatggatttctcc
aaggtcggtgagaagtttctcagctcagtccggtccgctagatctctcggcttccttccg
gctacttccgatcgccccgaggttccagaacgtgctgcagcagcagcagccatagctcgt
gcacttgcttcaatccctccacatcagaggcagaatatatcttcaagctctgaggagctc
agttctatgtatggaagcgaacctggtggtgaagtactagaaaaactggaggaagaattt
tatgaagaggagtttgatcccgttcgacacactttagagaatattccatcagaagaaagt
gatcttgcatattttgaggggaaggctgctcttagattattacagttggataaagtaaca
gaaagtctgtcacgccaagtgatggagcaccacgaagtaatggtgaaaggaatggatttg
gtaggcgagttggagaaggacttgaaggttgcgaatgtcatttgcatgaacggacgaaga
cacctcacttcttcgaggaatgaggtatcgagagaccttgttgttaacacgagttctaga
aggaaacagactcttctggacatgcttcaagttctagcaacacttcttcgtgcaaaggac
atgcaagtagaacttgaaaccctcgttaatgaagaaaatttctttaaggcattccaggtc
ctgtctgagtatcttcaacttctagatagcttatctgagcttttcgctatacaggagatg
agtcgtggtgtggagatttggctgggaagaactctacagaagctggattcacttttatta
ggagtgtgtcaagacttcaaggaaacaagttttttgactgtggtcgacgcttatgcattg
attggtgatgtttctggtcttgctgaaaagatacaaagcttctttatgcaggaggttata
tctgaaacccatgcagtccttaaaaacattctgctagaggatccagaagcggcagatatt
caaagcaccaggcttacatacagtgatctttgcactcggatacctgaatctgagtttagg
caatgtttgttggcaactctagctgcccttttcaagttgatgggctcgtatcatgcaatt
atgagcttccattcagagtgcaagatctcgatgggtcagttattacctgattcacagaac
caaggtgatgaaacaggatcctccaagaatgttcaacactctgatgagagtgaaagtggc
agctttgtccctggtgacccatctggttcagaatcaagggatgatggcagtggagcttca
agcagtggctccccatggtttcagctgcgaagtgatgccacaatagttgtttcacagaca
ttacagagaggtcgtaagaatctttggcaacttacaatgagccgattgtcagtattgctc
tcttcttccgcagtttcttctactagtattcatcagtttttaaaaatatatgaagatctc
aatatctttatcttggctggtgaggctttttgtggttcggaagcagttgagttcaggcag
aaagttagagttatctgtgaaaattattatcttgctattcacagacaaaatatacatgct
ctgaaaatggttttggaaaaagagagttgggtcaccatgccaccagagacgattcaggta
gtgagttttgcaggccttattggtgatggagctgcattactaagtcaaactggccacaag
tcacctgcttcagtaaaaactggtactaagcaaggtggattctcccattggattagaagt
gggaatccattttttctaaatcatgatcctaaggaatatgatggttctcccagagaaaaa
atcaatggggtatttcacaagaatgattcttcacataacagtgatacaaatcatactaat
ggccatcctgatacatcagaagatgaaaatgaagatcttcttgcagattttattgatgag
gatagtcaactgccaagccgtattgctaagcctaaacacttaaaaatttcctctgtatct
tggatggatgaagatatgacagcacacacaggatcatcagtttgtgtgctaaggctgatg
gacaaatatgcaaggctgatgcaaagattagagatcatcaatgttgagtttttcaagggg
atatgccaattatttggaatctttttctattacgtgtttgaaagctttggtcatcagaac
gttaatcctagtgggaagacaaatagtgatgctctcaactatcgtctgaaaacagcagta
tccagaattatgcaagattgcaatcaatggataaaaccaccatctctttcaggctcttac
tcttcacatgcaactacaaacatgcaattttctcacatggacatcacacccactccaccc
agttcaaattctagtcatttgtccagcaccactttaggcttgaaggaaagatgtgcagga
gctgacactatatctcttgttgctcgattgttgtataaatccaaggctcatcttcaatca
gtcctcctgactaataatgctacagtggttgaagaattttatttgcagttggtggattct
gtgccagatctcatagagcaaatttatagaacgactgcaaagtcacttcttcatattaat
gggtatgctgatcgagttgctagtgctaagtgggaggttaaagaacttggaatggaacat
aatgggtatgttgacctgttactaggagaatttaagcactacaaaacaagactagctcat
ggaggtattaggacggaggttcaagatcttttaacagagtacggacttgaaaatatttct
gacgttctcgttgaaggtctctcaagagtgaaacggtgttctgatgagggccgcgcccta
atgctattggatcttcaggttttgatcaatggccttcagcattttgtcaccgttaatgtt
aagccgaagttgcaaaccgtcgaaacgtttatcaaggcatattatcttccagaaactgaa
tatgtgcactgggcacgtgctcatccggaatatacaaaaagccaattagcagggctaatt
aaccttgtggctacgatgcaaggttggaaaaggaaaagcagattggaagtgttggaaaag
ataggagcagcaggcatgtaa
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