Erigeron canadensis (horseweed): 122603456
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Entry
122603456 CDS
T07610
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus-like
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03013
Nucleocytoplasmic transport
ecad03015
mRNA surveillance pathway
ecad03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122603456
09122 Translation
03013 Nucleocytoplasmic transport
122603456
03015 mRNA surveillance pathway
122603456
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122603456
03041 Spliceosome [BR:
ecad03041
]
122603456
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
122603456
Spliceosome [BR:
ecad03041
]
Complex C
Other components
EJC/TREX
122603456
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_ACIN1
RSB_motif
SAP
DUF2357
Motif
Other DBs
NCBI-GeneID:
122603456
NCBI-ProteinID:
XP_043632101
LinkDB
All DBs
Position
6:complement(25353559..25358937)
Genome browser
AA seq
695 aa
AA seq
DB search
MGEKSDSKKGSSPYVVLENRSLDQWKVTELKEELKKRKLMTKGLKEELVKRLDAAVRAEI
DDAKKNLENDLNSEAQPEVQSDDAAEKTADVMDQTLGVNEGLDDKNDGNKDVEMDMVHEN
DGLQSLAEKVVTEGEGGVVTTQVESFSVVREISVETTVLVSENLGGQESQMTEIKNTDVG
LNQENGEPKPQQQSPEELPELGSSDLISGNQVDEVSQVQSDSISIDTITNIEKNEIKDNV
IDDDVKLEIDVKPETILDRNNSESVEVDEQHEDKPAVEEKDANIVNSTDIHNEKDDVIAD
DVELDAKVEELQPLTESTGVDEPVKENLNAEEKYVDNTENVDICKKNDSGDVGSPEKLNL
DGDDSMEEDILESKQIDSKFSSDEVGDKSEKIGVKEDGSVHGMVEDENADKSFAAGEDKM
EPSVPSTKRKPYDHEGSENSEVVKRQRRWNSESLKVPEQVLPNHSASATPKDAFQTLAKR
AFSRSESIVSHDSPKERIVPPTSNPPTTSLRIDHFLRPFTLKAVQELLGQTGTVVSFWMD
QIKTHCYVTYASVEEAIETRNAVCNLQWPAYGGRLLMADFVDPQEVKNRVDPPPPSSEPP
ITTIPPATTKQPPQPSPRQKQQLPPPPTLPPPPPLSNAPLARARAPPTPEKIDPPIVTLD
DLFKKTRATPRIYYLPLSDEQVAAKLNAQGKPVKH
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaaagtctgatagtaaaaaggggtcttccccatacgttgttcttgaaaaccgg
tcccttgatcagtggaaagtaaccgagttgaaagaggaactcaagaaacgaaaattgatg
acaaaggggttgaaagaagaacttgttaagaggttagatgcggctgtacgagctgaaatc
gatgatgctaagaaaaatcttgagaacgatttaaatagcgaggctcaacctgaggtccaa
tcagatgatgctgcagagaaaactgcagatgtcatggaccagactttgggggtaaatgag
ggattggatgataaaaacgatggtaataaagatgttgagatggatatggttcatgaaaat
gacggtttgcagtcattagctgaaaaagtggttacggaaggtgaaggtggtgttgttacg
actcaagtggaatcttttagcgtagttcgagagatttcagtagaaaccactgttttagta
tctgaaaatttgggtggtcaagaatcacagatgactgaaatcaagaacacggatgtgggt
ctgaatcaagagaatggggagccaaagcctcaacaacaatctcctgaagaactgcctgag
cttggctcatcagatctcattagtggcaaccaggtagatgaggtcagccaagtacaatct
gattctatttctattgatactatcacaaatattgaaaagaatgaaataaaagataatgta
attgatgatgatgtcaaattagagatagatgttaagcctgagacgatcctagatcgtaac
aattcagaatcggtcgaagttgatgagcaacatgaggacaagcctgccgtggaagagaaa
gatgccaatattgttaacagcacagatattcacaacgagaaagatgatgtaattgctgat
gatgtcgagctggatgctaaggttgaggagctgcagccattaacagaatcaactggagtt
gatgagccagtcaaggaaaatcttaatgctgaagagaaatatgtcgacaatactgaaaat
gttgatatttgcaagaaaaatgacagtggagatgtgggatctccggaaaagctgaatttg
gatggtgatgattcaatggaggaagatattctagagagtaagcaaattgattcaaagttc
agttctgatgaagtgggagacaaaagtgagaaaattggagtaaaagaagatggttctgtg
catggtatggtggaggatgaaaatgctgataagagctttgctgcaggtgaagataaaatg
gagcctagtgtgccttccacaaaaagaaagccttatgatcatgaaggttcagaaaacagc
gaagtggtgaaaaggcagcgcagatggaattctgaaagtctcaaggtgcctgaacaagta
ttacctaaccattctgcctctgctacacctaaggatgcatttcagactcttgcgaaacgc
gccttttcaagatccgagtctatagttagtcatgattcgcccaaggaacgcattgttccc
cctacatcgaatcctccaactacatctcttcgaattgatcattttctgcgtcctttcacg
ttaaaggccgtgcaagaacttcttggccaaacgggtacagttgttagtttttggatggat
cagatcaaaactcactgctatgttacatatgcatctgtggaagaagctatagagacacga
aatgctgtatgcaacctacaatggcctgcgtatggtggacgtcttctgatggctgacttt
gtggatccacaagaggttaagaatcgggttgacccacctccaccttcttcggaacctcct
atcaccactatacctccagccaccaccaagcagccaccacagccctcacccagacagaaa
caacagctccctcccccacccacccttccaccgccgccaccattgtccaacgcaccacta
gcaagagcccgtgcgcctcctactcccgagaaaattgaccctccaattgttacattggat
gatctgtttaaaaagacgagagccactcctcgtatctactacttaccgctttctgatgaa
caagttgcagcaaagctgaatgctcaggggaaacctgtgaagcattag
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