Erigeron canadensis (horseweed): 122603775
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Entry
122603775 CDS
T07610
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 7-like
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
ecad
Erigeron canadensis (horseweed)
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ecad03009
]
122603775
03036 Chromosome and associated proteins [BR:
ecad03036
]
122603775
Enzymes [BR:
ecad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122603775
Ribosome biogenesis [BR:
ecad03009
]
Eukaryotic type
Pre-60S particles
Helicases
122603775
Chromosome and associated proteins [BR:
ecad03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
122603775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
GUCT
Helicase_C
ResIII
FlpD
Motif
Other DBs
NCBI-GeneID:
122603775
NCBI-ProteinID:
XP_043632511
LinkDB
All DBs
Position
6:43187404..43191798
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AA seq
701 aa
AA seq
DB search
MPSLAVLSETSETTTKVKKMMKNTATDTDTVALESPISKKEKKSKKIISSDSEKSEKKSK
KKRKAASDDDDNDTSSEQIQPNIKDDEGVKKSKKKKIKLDEEAALVEVVKKVEENPNAVT
NFRISEPLKNALKAKGIEALFPIQARTFNSIYDGLDLIGKAKTGQGKTLAFILPILESLI
NGPEKATRRTGYGRSPTILVLLPTRELAKQVFTDFKYYGEAVGLSSCCLYGGGGASIGPQ
TVQLKRGVDIVVGAVGRVKDHIERGNLDLCSLKFRILDEADEMLRQGFVEDVEYILGKVN
DATKVQTVLFSATLPAWVNHIASKFLKSDKKIVDLVGVQVMKASENVRHIIMPCSWTARS
QVIPDIIRHHSSGGRTIIFTETKDYCSELSGLLTGARPLHGDIQQSVREQTLAGFRSGKF
MTLVATNVAARGLDINDVQLIIQCEPPRDVEDYIHRSGRTGRAGKSGVAITLYEPRKANI
SKLEREAGVKFEHISAPQPADIAKAAGGDAAEAIIQVADSVIPVFKSAAEELLNSSGLTP
VELLAKALAKSVGYTEIKKRSLLSSMENFVTLHLDAGRPCYTPSFAYGVLRRFLPEEKVE
SIQGLALTADQRGAVFDVPVEDLDMFLAGQENATGVSLQVVKELPQLQEKEQARSRFSSG
SNGFSRGRNFSDRRNDRFSRGSGGRSGGGGSRGGRGSYKRY
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgccttctcttgccgttttgtctgaaacttctgaaacaactactaaagtcaagaagatg
atgaagaacaccgccaccgacaccgacaccgtcgctctcgaatctccaatttcaaaaaaa
gaaaaaaagagcaaaaaaattatctcttctgattctgaaaagtcagaaaagaaatccaaa
aagaaacgtaaagctgcttctgatgatgatgataatgatactagctctgaacaaattcaa
cctaatatcaaggatgatgagggtgtgaagaaaagtaagaagaagaaaataaaattggat
gaagaggcagcactagttgaggttgttaagaaagtagaagagaatccgaatgcggttact
aattttagaatttcggagccgttgaagaatgctttgaaggctaaggggattgaagcattg
tttccaattcaggccaggacttttaattctatctatgatggtcttgatttgattgggaaa
gccaaaactggtcaggggaaaacattggcttttatattgccaatattggagtctttaatc
aatggacctgagaaagcaactaggaggaccgggtacgggcggtcacctacgattcttgtg
cttttgccaactagggagttagcaaagcaggtgtttacggatttcaaatattacggtgag
gctgttggcttgagttcatgttgtttgtatggtggtggaggggcatctattggtcctcaa
actgttcaactgaaaagaggagtggatattgttgtcggagctgttggtcgtgttaaggat
catattgagagagggaaccttgacttgtgctcattgaaattccgtatccttgatgaagct
gatgaaatgttgaggcaaggttttgttgaagatgttgaatatattctaggcaaggtgaat
gatgccaccaaagttcaaacagttctgttcagtgcaactttaccagcttgggtgaatcat
attgcatcgaagtttttgaaatcagacaagaagattgtagatcttgttggtgttcaggta
atgaaggccagtgaaaatgttagacacatcatcatgccttgttcttggacagcaagatca
caggtcattcctgatatcattcgccatcatagcagtggtggccgtaccattattttcacc
gagacaaaggattattgctctgaactatctggactactgacaggagcccgaccgttacat
ggtgacattcaacagtctgtgcgagagcaaacacttgcgggattccgatcaggcaagttc
atgacattggtggccacaaatgtggcagctcgaggactcgatattaatgatgtccagctg
atcatccagtgtgaaccaccacgtgatgttgaagactatattcaccgatctgggaggaca
gggagagctgggaagtctggtgttgccattacactttatgagccaaggaaggccaatatc
tccaagttagagagagaagcgggtgtcaaatttgaacatatatctgctcctcaaccggct
gatattgctaaagctgctggtggagatgcagcagaggcaataatacaagttgccgacagt
gtcatccctgtcttcaagtcagctgcagaggagttgttaaattcttctggcctaacaccg
gtggaacttcttgctaaggcgcttgccaagagtgttggatatacagaaattaaaaagagg
tcacttctatcgtccatggagaactttgtgacactacatcttgatgctggaagaccttgt
tatacaccttcattcgcatatggtgtcttgagaaggtttctgcctgaagaaaaagtagag
tcaattcaaggtttagccctaactgctgatcaaagaggtgctgtctttgatgttcctgtg
gaagacttggatatgttccttgctggccaggagaatgctacaggagtgagcttgcaggtg
gtcaaggagctgccacaattgcaagaaaaagagcaggccagatcaagatttagcagcggt
agtaatgggttctctcgtggacgtaatttctctgatcgccggaatgatagattttctaga
ggttctggaggcagaagtggtggtggtggtagtagaggcggccgtgggagttacaagaga
tattaa
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