Erigeron canadensis (horseweed): 122603816
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Entry
122603816 CDS
T07610
Name
(RefSeq) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad00040
Pentose and glucuronate interconversions
ecad01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
122603816
Enzymes [BR:
ecad01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
122603816
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
122603816
NCBI-ProteinID:
XP_043632571
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Position
6:complement(34067169..34069008)
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AA seq
402 aa
AA seq
DB search
MASNFLPLIILLSSLTIVFSSPNQTPDSVIDEVHQSINNASRRNLGYLSCSTGNPIDDCW
RCDSNWATNRQRLADCAIGFGKNALGGRNGKIYVVTDPGNDNPVNPVPGTLRHAVIQDEP
LWIIFKRDMVIQLRQELVMNSFKTIDGRGVNVHIGNGPCITIHYATNIIIHGIHIHDCKQ
AGNGNIRNSPHHSGWWTQSDGDGIAIFASKHIWIDHCSLSSCHDGLIDAIHGSTAITISN
NYMTHHDKVMLLGHSDSYTQDKAMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWE
MYAIGGSASPTIYSQGNRFLAPNTRFDKEVTKHENAGESEWRNWNWRSEGDLMLNGAYFT
ESGGGASSSFARASSLSGRPSTLVGAMTRTAGALVCRKGSHC
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atggcctccaatttcttgccattgatcatcttgctttcttcactcaccattgttttttca
tcacccaatcaaacaccagattcagtaattgatgaagttcaccaaagtatcaataatgct
tctaggagaaacttgggttacctctcttgcagcactggcaacccgattgacgattgctgg
aggtgtgactcaaattgggccacaaatcgccaaaggctagctgactgcgctattgggttt
ggaaagaacgctttaggagggcgaaatggcaagatatatgttgtcactgaccccggaaac
gataaccctgtgaacccggttccagggaccctaagacatgctgttattcaagatgaaccg
ttatggatcatctttaaacgcgacatggtgatacaattgcgccaagagctcgttatgaat
tcgttcaagactatcgatggaaggggtgtgaatgtgcatattggaaatgggccatgtatt
actatacattatgctactaatataatcatacatgggattcatatacatgattgtaagcag
gctgggaatggtaacattagaaactcaccacatcattcgggttggtggacacaatctgat
ggagatgggattgcgattttcgcaagtaaacatatctggattgatcattgttcattgtct
agttgtcatgatggacttattgatgctatacatggatctacagccatcactatatctaac
aattacatgactcatcatgataaagttatgttattgggacatagtgatagctatacacaa
gataaagcaatgcaagtcaccattgctttcaaccattttggtgaagggcttgttcaaaga
atgccaagatgtagacatggatatttccatgtggtgaacaacgactatacacattgggaa
atgtatgcaattggtggtagtgcatctcctaccatctatagccaaggcaatagatttttg
gcaccaaatacaagatttgacaaggaggtaaccaagcacgagaatgcaggggaaagtgaa
tggaggaattggaattggagatcagaaggggatttgatgttaaacggggcgtatttcact
gagtctggtggaggtgcttcttcatcatttgcaagagcttcaagtttaagtggtagacca
tcaacactcgtgggagcaatgactcggactgcgggggctctagtttgtagaaaagggtct
cattgctga
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