Erigeron canadensis (horseweed): 122603884
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Entry
122603884 CDS
T07610
Name
(RefSeq) SWI/SNF complex component SNF12 homolog
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122603884
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecad03021
]
122603884
03036 Chromosome and associated proteins [BR:
ecad03036
]
122603884
Transcription machinery [BR:
ecad03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
122603884
Chromosome and associated proteins [BR:
ecad03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
122603884
PBAF complex
122603884
GBAF(ncBAF) complex
122603884
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
FLAD1_M
Motif
Other DBs
NCBI-GeneID:
122603884
NCBI-ProteinID:
XP_043632661
LinkDB
All DBs
Position
6:34364975..34368139
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AA seq
503 aa
AA seq
DB search
MSVNHSNNAQKISGVPSNPNVQFGSQPQFGGAHVQAQLKVQAKAAAQAQANHAQFQAQLQ
AQGVAINQSQGSLVTTNSGGAKRAGQKPVGRPPGVVNSSPKRGTEVTPPGRQRKKQKVAG
KQLQERMAAILPQSALYTELLEFESRVDSALMRKKVDIQEAIKNPLSVQKTLRIYVFNTF
ANQVQTIPRKANDEAPSWTMKIVGRVLEDGMDPDQAGLMLKSNPMYPKFSSFFKRVTIGL
DQRLYPDNHMIVWDSSRMPTPHEGFEVKRKGDKEFNVNIRMEMNYLPEKFRVSAPLMEVL
GVEVDTRARVIAAIWQYVKARKLQDSDDPSYFKCDPPLQKVFGEEKIKFSMVSQKISNHL
SPPPPIHLEHKIKVSGDCPAGSACYDILVDVPLLVEKELNALLANIEKTKEIEVCDEAIC
TAIRKINEHHKRRAFFLGFSESPVEFIDALIESQGRDLKFLTGNAIRNDEKESQTEFYNQ
PWVEDAVIRYLNRRPARIAPKST
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgtctgttaatcatagtaataatgcccaaaagatttccggtgtaccgtcaaacccgaat
gtgcaattcgggtcacaaccgcagttcggtggggctcatgttcaggcccagttgaaagtt
caggcgaaagctgcagctcaagctcaggcgaaccatgctcagtttcaggcccagttgcag
gcccaaggagtggctattaatcagtctcaggggtctttggttactactaatagtgggggt
gcgaaacgtgcgggtcagaaacccgttggacggcctcctggggtggtgaattcgagcccg
aagaggggtacggaggttacaccgcctggtcgtcagagaaagaagcagaaggttgctggg
aagcagttgcaggaaagaatggctgcgattctgccccagtctgcgttgtacacggaacta
ctcgagtttgagtcacgggtggattctgctttgatgagaaagaaggtggatatccaagaa
gctattaaaaacccgttgagcgttcagaagacgcttaggatatatgtatttaatacgttt
gcgaatcaggttcagacgattcctagaaaggctaacgatgaggcgcctagttggacgatg
aaaatagtaggaagggttttggaagatgggatggatcctgatcaggctggattgatgttg
aaatcgaacccaatgtatccaaagttttcgtctttttttaaaagagttactatagggttg
gaccaaagattgtatcctgataaccatatgattgtgtgggatagttctagaatgccgaca
cctcatgaagggtttgaagttaaaaggaaaggtgataaggaatttaatgtgaatatacgg
atggaaatgaattatcttcccgagaaatttagggtttcggctcctttaatggaagttctt
ggagttgaagttgatactcgagcaagagttattgcagcaatttggcagtatgttaaggct
aggaaattgcaggactcagatgacccgtcttattttaaatgtgatccaccgcttcaaaaa
gtgtttggggaagaaaaaataaaattttcaatggtctcacagaagatttcaaatcattta
tctccaccgccacctatacatttggagcataagatcaaggtatcgggagattgtcctgct
ggaagtgcttgttatgatatactggtagatgtgccactgcttgtagaaaaagaattgaat
gctttattagcgaacattgagaaaacgaaagagattgaagtctgtgatgaagcaatatgt
acagcaatcagaaagataaacgagcatcataaaagaagggcattttttcttggctttagt
gagtcacctgtggagtttattgatgctctgattgaatctcaaggcagagatttgaaattt
ttaacagggaatgcaatccgtaatgatgaaaaagagagtcaaaccgaattctataaccaa
ccctgggttgaagatgcggttatccgttatctaaatcgtagaccagctagaatcgctccc
aaaagcacataa
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