Erigeron canadensis (horseweed): 122603891
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Entry
122603891 CDS
T07610
Name
(RefSeq) FACT complex subunit SSRP1-like isoform X1
KO
K09272
FACT complex subunit SSRP1/POB3
Organism
ecad
Erigeron canadensis (horseweed)
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ecad03000
]
122603891
03036 Chromosome and associated proteins [BR:
ecad03036
]
122603891
Transcription factors [BR:
ecad03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG2-related
122603891
Chromosome and associated proteins [BR:
ecad03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
FACT complex
122603891
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH1_SSRP1-like
POB3_N
SSrecog
Rttp106-like_middle
HMG_box
HMG_box_2
Phage_TAC_9
CDC45
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
122603891
NCBI-ProteinID:
XP_043632671
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Position
6:33124087..33130475
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AA seq
641 aa
AA seq
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MADGHMFNNISLVGRGGNNPGQLRVHSRGLLWKKQGGGKAVEVDKSDIVNITWMKVPRSN
QLSVLIKDGLKYKFVGFRVQDVASLTNFFQNSCNIAPEEKQLSVSGKNWGELDINGNMLS
FLVGGKQSFEVSLADVSQTQLQAKTDVILEFHVDDTTGANEKDSLMELTFYVPNSNPQFV
GDENRSPAEVFREKIMSMADVGTGGEGPVVTFESIQTLTPRGRSVFELHLSFLRLHGSVG
DFKIQYSSIVRVFVLPKAQPHTFVVITLDPPIRKGNTMYPHIVTQFDTDNVVESTLVMNE
DLFATKYKDKLEPSYKGLTHEVFTMILRGLSGTKLTRPGKFRSFHDGYAVKSSLKAEDGV
LYPLEKSFFFLPKPPTLILHDEIEYVEFERHSAGGANMQYFDFLIKLKTEQEHLFRNIQR
SEYHNLYAFIRSKPTIRIMNLGGAAQAPDGVAAVLQDEEDDAVDPHLERIRNAAGEEDSD
EEDEDFVADKDDDGSPSDDSGDDDSNGSGSGSEKEQRVPKKESKKKPTVSKVSSSKKRNN
DEGPSQSKKQKKKKDPNAPKKALSGFMFFSQLERENIRKEIPGISFKDIARVLGERWNKM
TAEEKEPYEAKALADKKRYQNQINDYQQATKMDLMDESDSN
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggccatatgttcaacaacatctctctcgtcggccgtggcggcaataatcca
gggcaactaagggttcattcacggggactgctgtggaagaaacaaggtggtggcaaggct
gtggaagtagataagtcggatatcgtgaacattacttggatgaaggtgccacggagcaat
cagcttagtgtgctgattaaggatgggctcaagtataagtttgttggttttcgtgttcag
gatgtggccagcctgaccaattttttccagaactcgtgtaatatagcaccggaagagaag
cagctttcagttagtggaaagaactggggagaattagatataaatggtaatatgctttct
tttcttgttggtgggaagcaatctttcgaagtgtctttggctgacgtgtcccagacacag
ctacaagcaaagactgatgtcatcttggagttccatgtggatgacacaactggtgcaaat
gagaaagattctttgatggaattgaccttctatgttcccaattcaaaccctcagtttgtt
ggggatgaaaatcgctctcctgcagaggttttccgagaaaaaataatgtcaatggcagat
gtcgggaccggaggtgagggacctgttgtcacttttgagagcattcaaacacttactcca
aggggccgttctgtttttgaacttcatctttcgtttttgcggcttcatggctcggttggt
gatttcaaaatccaatacagcagcatagttcgtgtttttgttttacccaaggcccagcct
cataccttcgttgttattactttggaccctcctatccgaaaagggaatactatgtaccca
catattgtgacacagtttgatactgataatgttgtggagagtacattggtgatgaatgag
gacttgtttgctaccaaatacaaagacaagttagaaccgtcatataagggtcttactcat
gaagtcttcacaatgatattgcgcgggttatctggcacgaagctcactagacccggtaaa
tttcgtagctttcatgatggatatgctgtgaagtcctcactaaaagctgaagatggcgtt
ctgtatcctctggagaagagctttttcttcctaccaaagcctcccacacttattcttcat
gatgagattgagtatgtagagtttgaaaggcattctgctggtggagcaaacatgcagtac
tttgattttcttatcaagctaaagacagagcaagaacatcttttccgtaacattcagaga
agtgaatatcataatttgtatgcttttataaggtcaaagcctactataagaatcatgaat
ttgggaggcgctgcccaagctccagacggtgttgcggctgttctgcaggatgaagaggat
gacgctgttgaccctcatcttgagcgaattagaaatgcagctggcgaagaagatagtgat
gaggaggatgaggattttgttgctgacaaggatgatgacggctcccccagtgatgattct
ggggatgatgactcgaatggtagtggtagtggaagtgaaaaggagcagagagttcccaag
aaagaatccaagaaaaaacctactgtttctaaagtctcttcaagtaagaagagaaataat
gatgaagggccttcacagagtaagaaacagaagaagaaaaaggatccaaatgcacccaag
aaagcactgagtggtttcatgttcttctctcagcttgaacgagagaatattaggaaggaa
atccctggaatttcattcaaggacattgcgagggttcttggagagcgatggaacaaaatg
acagctgaagagaaggaaccgtatgaggcaaaagccttggcagacaagaaaaggtatcag
aaccaaatcaacgactaccaacaagccaccaaaatggatttgatggatgaatctgacagt
aattag
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