Erigeron canadensis (horseweed): 122603943
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Entry
122603943 CDS
T07610
Name
(RefSeq) exosome complex component RRP41-like
KO
K12587
exosome complex component MTR3
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122603943
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122603943
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
122603943
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
122603943
NCBI-ProteinID:
XP_043632743
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Position
6:35357409..35359784
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AA seq
254 aa
AA seq
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MAAKGGGAPPTYSPSPSSFKKSRPSIFTDVDWVRPDGRDFHQCRPAFLRTGAVNAASGSA
YAEFGNTKVIVSIFGPRESKKAMMYSDTGRLNCNVSYTTFATPVRGQASENKELSSQLHK
SLEGAIILDTFPKTTVDVFALVLESGGCDLPVVISCASLALADAGIMMYDLVAAVSVSCL
GKNLVIDPVSEEENYQDGSLMITCLPSRNEVTQLTITGEWSTPKIHEAMELCLDACSKLG
KIMRSCLKESTSTS
NT seq
765 nt
NT seq
+upstream
nt +downstream
nt
atggccgccaaaggtggaggtgctccgccgacatactcaccgtctccgtcatccttcaag
aaatccagaccttccattttcactgatgtcgattgggtccgtcccgacggtcgtgatttc
catcagtgcagacctgcatttttacgaacaggtgccgtaaatgcagcgtcggggtctgcg
tacgctgaattcggaaatactaaagtcatagtctctatatttgggccaagggaaagtaag
aaagcaatgatgtacagtgatactggtcgattgaattgtaatgttagttatacaactttt
gccactccagtaagggggcaggcatcggaaaacaaagaattatcttcacagttgcataag
tctttggagggtgccatcattctagatacatttccaaaaacaaccgtggatgtatttgca
ttagtgttggagtctggcggttgtgatcttcctgtagtaatctcatgtgccagtcttgca
ttggcggatgcagggattatgatgtatgatttggttgctgctgtttctgtgtcttgccta
gggaaaaatctcgtgattgatccagtttcagaagaagaaaactatcaagatggcagtctt
atgattacatgtttgccatctcgtaatgaggttactcagctgacgataaccggagaatgg
tctaccccaaagattcatgaggcaatggagctatgtcttgacgcctgttcaaagttaggg
aagatcatgagatcgtgtttgaaagagtctacatccacctcataa
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