Erigeron canadensis (horseweed): 122604008
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Entry
122604008 CDS
T07610
Name
(RefSeq) probable small nuclear ribonucleoprotein F
KO
K11098
small nuclear ribonucleoprotein F
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122604008
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122604008
03041 Spliceosome [BR:
ecad03041
]
122604008
03032 DNA replication proteins [BR:
ecad03032
]
122604008
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
122604008
Spliceosome [BR:
ecad03041
]
Complex A
U1 snRNP components
Sm proteins
122604008
U2 snRNP components
122604008
Complex B
U1 snRNP components
122604008
U4/U6.U5 tri-snRNP components
122604008
Complex C
U2 snRNP components
122604008
DNA replication proteins [BR:
ecad03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
122604008
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
122604008
NCBI-ProteinID:
XP_043632824
LinkDB
All DBs
Position
6:38855843..38858864
Genome browser
AA seq
88 aa
AA seq
DB search
MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGFLVSVDSYMNLQLANSEEYIDGVLSGNL
GEILIRCNNVLYLRGVPEDEEIEDADHD
NT seq
267 nt
NT seq
+upstream
nt +downstream
nt
atggccacagtaccggttaacccgaagcctttcttgaacaatctgaccggaaagcccgtc
attgtgaaacttaaatggggaatggaatataaaggttttcttgtctctgttgattcttac
atgaacttgcagttggcaaactctgaagaatacattgacggcgtgttgtctggtaacctc
ggagagattttaatcagatgtaataacgttctctatctacgaggtgtaccagaggatgaa
gaaattgaggatgcggaccatgactag
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