Erigeron canadensis (horseweed): 122604069
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Entry
122604069 CDS
T07610
Name
(RefSeq) tRNA pseudouridine synthase A-like
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
ecad
Erigeron canadensis (horseweed)
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ecad03016
]
122604069
Enzymes [BR:
ecad01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
122604069
Transfer RNA biogenesis [BR:
ecad03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
122604069
Prokaryotic type
122604069
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
PseudoU_synth_1
DUF2344
ZT_dimer
Motif
Other DBs
NCBI-GeneID:
122604069
NCBI-ProteinID:
XP_043632905
LinkDB
All DBs
Position
6:complement(2223480..2226995)
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AA seq
491 aa
AA seq
DB search
MDTQTSQSLPPPEQPDSKKPKLSATTTTTNSDDDDRTTTTTTAEKKPRYKRRKVAILFAY
CGVGYQGMQKNPGAKTIEGDLEEALYFSGAVPESDRGCPQRFDFARSARTDKGVSAVGQV
VSGKFYVDPPGFIERLNNNLPDQFRIFGFKRVTASFSAKKFCDRRRYVYLLPVFALDPNS
HRDRESVLASLGSDNELVKCLECSERGRKVDVNVQSGISSNALPDAKQGNLSVLENVVVV
ESKSSLGTISTSVLETHSGVSSNTSCALSENTTSLDNVVVDGENVVKENVFRYGDKEKER
FNKILKQYEGTHNFHNFTTRTKAGDPSANRYIISFHANTTVTVDGIEFVKCEVVGQSFML
HQIRKMIGVAVAIMRNCAPESLMEKALQQDVRINVPTAPEVGLYLDECFFSSYNQKWKDT
HEEVSMKAYAEEAEEFKLKHIYSHIASTEHKEGSVAVWLHSLNYRNYPDLGPEENEEGNE
VLRGQAEVTTG
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atggacactcaaacctctcaatcacttccaccacccgaacagcccgattccaagaaaccc
aaactctccgccaccaccaccaccaccaactccgacgacgatgaccgaacaaccaccaca
accaccgccgaaaaaaaacccagatacaaaagaagaaaagtagccatcttgtttgcatac
tgtggtgtaggttatcaaggtatgcaaaaaaacccaggtgccaaaaccatcgaaggcgac
ctggaagaagccctttacttctccggtgcggtacccgaatccgacaggggctgcccgcag
cgttttgactttgcccgttctgcccgaaccgataagggtgttagtgctgttggccaagtg
gtttctggtaagttttatgttgacccacctggttttattgagcgtttgaataataatttg
cctgatcagtttcgtattttcgggtttaaacgtgttacggctagttttagtgctaagaag
ttttgtgatagacggagatatgtttatttgttgcccgttttcgcgcttgatcctaatagt
catagggatagggaaagtgtgttggctagtttagggtctgataatgagcttgttaagtgt
ttagagtgttccgaaagaggtcggaaagttgatgtcaatgttcagtcaggcatttcgtcg
aatgccttacctgatgctaagcaggggaatttatcggttttagagaatgttgtggttgtc
gagtctaaatcgtcattgggaacaatatcaacatctgtattggaaactcattcaggcgtt
tcgtcgaacacgtcgtgtgcattgtcggaaaatacgacgtctttagataatgttgttgtc
gatggagaaaatgttgtaaaagaaaatgtgtttcgatatggtgataaagagaaagagagg
tttaataagatccttaaacaatatgaagggactcataattttcataattttacgacaagg
acaaaggccggtgatccgtctgctaaccgttacattatctcgtttcatgctaacactact
gttacggttgacgggatagagtttgttaaatgtgaagttgttgggcagagttttatgctt
catcagattaggaagatgattggtgttgctgttgcaattatgaggaattgtgctccggaa
tcgttgatggaaaaagctctacaacaggatgttaggatcaatgtgcctaccgcgcctgaa
gtcgggttatatttggacgaatgctttttttcttcatataaccaaaaatggaaagacact
catgaagaagtgtcaatgaaagcctatgcagaggaagccgaagaattcaagttgaaacat
atttattcacacattgcatcaaccgagcacaaggaagggtctgttgctgtttggctgcat
tctttgaactaccgaaattatccagatttaggcccagaagagaatgaggaaggaaatgaa
gtactgaggggtcaagccgaagtgacaactgggtga
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