Erigeron canadensis (horseweed): 122604074
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Entry
122604074 CDS
T07610
Name
(RefSeq) E3 ubiquitin-protein ligase SINAT3-like
KO
K04506
E3 ubiquitin-protein ligase SIAH1 [EC:
2.3.2.27
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
122604074
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ecad04121
]
122604074
Enzymes [BR:
ecad01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122604074
Ubiquitin system [BR:
ecad04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
SINA (Seven in absentia) proteins
122604074
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sina_TRAF
Sina_ZnF
Sina_RING
zf-C3HC4_2
DUF7567
Motif
Other DBs
NCBI-GeneID:
122604074
NCBI-ProteinID:
XP_043632911
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Position
1:24718650..24722072
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AA seq
338 aa
AA seq
DB search
MDLDNIECVSSSDGLEDEEIHPQIAHNHHQFGNLNSKPHIIINNNNNNNNNSNNGNNNLG
IPGLTPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVQNRCPTCRQELGDIRC
LALEKVAESLELPCRYISLGCPEIFPYYSKLKHEALCNFRPYSCPYAGSECSVTGDIPFL
VTHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAP
VYMAFLRFMGDEADARNYSYSLEVGANGRKLTWEGTPRSIRDSHRKVRDSHDGLIIQRNM
ALFFSGGDRKELKLRVTGKIWKEQQNQEGGVCIPNLCS
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
atggatttggataatattgagtgtgtatcatcttcagatggattagaagatgaagagatc
cacccacaaattgcacataatcatcatcaatttgggaatcttaattcaaaacctcatatt
attataaataataataataacaataataataatagtaataatggtaataataatttggga
attcctgggttgactcctgcaacaagtgttcatgaattattggaatgtcctgtttgtact
aattctatgtatcctcctattcatcagtgtcacaacgggcacacattatgttccacctgt
aaaacacgagtgcaaaaccgatgccctacatgcagacaagaattaggtgatattagatgc
ttagctttggagaaagttgcagagtctcttgaacttccgtgtagatatatttcattggga
tgcccagagatattcccttattacagcaagcttaagcatgaagcgttgtgcaatttcagg
ccctatagttgcccgtatgctggatcagagtgctcggttacaggggacataccttttctg
gttacccatctaagagatgaccacaaagtagatatgcatacaggttgtacatttaatcat
cgatatgtgaagtccaaccctcgtgaagttgaaaacgccacttggatgctcaccgtgttt
cattgttttgggcagtacttctgccttcactttgaagcatttcagctaggaatggcacct
gtttatatggcttttcttcggttcatgggtgatgaagcagatgcacggaattacagctac
agcctggaggttggagccaatgggagaaaactaacatgggagggaacaccaagaagcatc
agagatagccataggaaagtaagagacagtcacgatggattgataatacagagaaatatg
gcacttttcttctcgggtggagaccggaaggaactcaaactcagagttacaggcaagata
tggaaggaacaacaaaatcaagaaggtggggtttgcattccaaatctttgcagttga
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