Erigeron canadensis (horseweed): 122604090
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Entry
122604090 CDS
T07610
Name
(RefSeq) probable pectate lyase 5
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad00040
Pentose and glucuronate interconversions
ecad01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
122604090
Enzymes [BR:
ecad01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
122604090
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
122604090
NCBI-ProteinID:
XP_043632925
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Position
6:39025335..39031384
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AA seq
502 aa
AA seq
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MPQTHSSNTYILLFCLLTSLFSVIRATFNLTLPHQHPYPEAVVQEVQRRLNVSIYRREML
ESSTTTATSTGGGGSSSCLTGNPIDDCWRCDPNWANNRQRLADCAIGFGKSAGGGKGGQI
YIVTDSSDHDVVSPTPGTLRYAVLQTEPLWIVFQSNMVIKLKHELIINSYKTIDGRGANV
AITGGGCLTIQYVSNVIIHNIRIYDCKPSGNVNIRSSPSHVGFRGKSDGDGISIAGSRNI
WIDHCSLSHCTDGLIDAVLGSTAITISNSYFTHHNEVMLMGHDDDYMPDKGMQVTFAFNH
FGRGLIQRMPRCRHGYFHVVNNDFTEWKMYAIGGSADPTINSQGNRYIAPPDADSKEVTK
RVDTDEGNWAGWNWRTDGDIMVNGAFFVPSGDGMSGIYAKAASYEPKSANLVTQLTMYAG
VFGGPRDDDGSESFTDGTITGDSASGNTGRGSDSDGDYFGMIFGGGSVATSPPSTIVLFT
LLILCIAITTKNCGGLITVLLL
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgcctcaaactcactcttctaacacttacattctattgttttgcctcttgacatctctg
ttttctgtcattagagccacttttaacctcactcttcctcatcaacacccttatcctgaa
gctgtggttcaagaagtacaaaggagactaaatgtatctatatacagaagagaaatgctg
gaaagtagtacaaccaccgccaccagcactggtggcggcggtagcagcagctgtctcacc
ggaaacccaatcgacgactgctggagatgcgacccaaattgggcaaacaacaggcaacgt
ctcgcagactgcgcaatcgggttcgggaaatccgcaggaggcggaaaaggcggtcagatc
tacatagtaactgattcctcggaccacgacgtcgtttcaccgactccaggcactctgcgt
tacgccgtgttacaaaccgaacccctttggatagtatttcagtcaaatatggtaattaag
ttaaaacatgaattgataataaatagttataaaacaatagatgggaggggagccaatgtg
gcaataacaggaggtggatgtttaactatacagtatgtaagcaatgtgatcatacataat
attcggatttacgactgtaaaccatctgggaatgttaatataaggtcaagtccatcacat
gttggatttagaggaaaatcggacggtgatgggatatcgattgctggatcaagaaatata
tggatagatcattgttcattatcacattgtactgatgggttgatagatgctgtgttggga
tccactgctattactatttcaaatagctattttactcatcataatgaagttatgcttatg
ggtcatgacgatgattatatgcccgacaaaggaatgcaggttacatttgcatttaatcat
tttgggagaggtttgatacaaaggatgccaaggtgtagacatgggtattttcatgtggtg
aataatgattttacggaatggaagatgtatgcgattggtgggagtgctgatccgacgata
aatagtcagggaaatcgatacattgcaccaccagatgctgattccaaagaggttaccaag
agagtggacaccgatgagggtaactgggcagggtggaattggagaactgatggcgatata
atggtaaatggtgcattctttgtgccatcaggcgacggcatgagtggaatctatgcaaag
gcagcaagctatgagccgaagtcagccaaccttgtaacgcaactgacgatgtacgccgga
gtctttggtgggccaagggatgatgatggtagcgagtcatttactgatgggacgatcacc
ggagatagtgcaagcgggaacactggaagaggcagtgacagtgatggtgattactttggg
atgatatttgggggtggctcagttgcaacgtcaccaccttcaaccatagttctttttact
cttttaattttatgcattgccattaccaccaagaattgtggtggattgattacagtatta
ttactatag
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