Erigeron canadensis (horseweed): 122604323
Help
Entry
122604323 CDS
T07610
Name
(RefSeq) transcription initiation factor IIF subunit alpha
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
122604323
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecad03021
]
122604323
Transcription machinery [BR:
ecad03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
122604323
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
DUF3138
HVO_2753_ZBP
DZR
DUF1258
Motif
Other DBs
NCBI-GeneID:
122604323
NCBI-ProteinID:
XP_043633149
LinkDB
All DBs
Position
1:complement(30711401..30716249)
Genome browser
AA seq
548 aa
AA seq
DB search
MAAGGSSSELVLKGWCEGCRSTVELYGSNCKHMTLCVNCGKAMALRHDKCRDCGQTITRL
IREYNVRASSPTDKNYFIGRFVTGLPTFSKKNNNKWSLQKEGLHGRQITDTLREKFKNKP
WLLEDETGQFQYQGVLEGAQTATYYLLMLQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAE
EKIKNRRKTADGYERWMMKAANNGAAAFGEVERFDDKESGGGGAGPRGRKKNNTEDDEAN
VSDRGEEDEDEESARKTRLGLNKRGGDDDEEGPRGGDLDFDDDDIEKGDDWEHEEIFTDD
DEGVANDPEEREDLAPEIPAPPEIKQDEEDEEDNEEEEGGLSQSGKELKKLLGKNNGVNE
SEPEQEDDDDDDDDIEDESSPVLAPKSNTGSSKRNNPPKEEPVDNSPSKPAAPGSARGTP
NSTKSAKGKRKNNDEAKTSNGAATKKVKTENEVKTVKDEPASAAKNSAPAKGASSSKAAA
SPSTGPVTEDEIRAVLLHKAPVTTQDLVAKFKSRLRNKEDKGAFADILRRISKIQKTNGP
SYVVLRDK
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggggggatcgagtagtgaattggtgttgaaagggtggtgtgagggatgcaga
tcgacggtggaattgtacggaagcaactgtaaacacatgaccctttgtgttaattgtggc
aaagccatggccctccgccacgacaagtgccgtgattgtggccaaaccatcacccgtctt
atccgggaatataatgtccgggctagctcccccacggataagaattacttcattgggcga
tttgttactggcttaccaactttctctaaaaagaacaacaacaaatggtctctccagaaa
gaaggcttacacggacgtcaaatcaccgatacccttagggagaaatttaagaacaaacct
tggctgttggaagatgaaaccggacagttccagtaccagggtgttcttgagggtgcacag
accgcgacatactaccttttaatgctacagggcaaggagtttgttgccatccctgctggt
tcatggtacaacttcaacaaagttgcgcagtataagcaacttactcttgaggaagctgaa
gaaaagattaaaaatagaaggaaaactgctgatggttatgagagatggatgatgaaagcc
gcaaacaacggggctgctgcttttggtgaagttgaaagatttgatgacaaggaaagtggc
ggcggtggggccggacccagaggacgtaaaaagaataatactgaagatgatgaagcaaat
gtgtcagaccgtggggaagaagatgaagatgaagagtccgctaggaaaaccaggcttggt
cttaacaagagaggaggcgatgatgacgaggaaggtcctagaggtggtgatcttgacttt
gatgatgacgatattgagaagggtgatgactgggagcacgaggaaattttcacagatgat
gatgaaggtgtggctaacgaccctgaggaacgtgaagatcttgcccctgaaatccccgct
cctcctgaaatcaagcaggatgaagaagatgaggaagacaatgaagaagaggaagggggt
ctgagccaatctggaaaggagttgaagaagctgctggggaaaaataatggagtgaatgaa
tcagaaccagaacaggaggatgatgacgatgacgacgatgatattgaagatgaaagttcc
cccgttcttgcaccaaagtctaatactggttcttcgaagcgtaacaatcctcccaaagag
gaaccggttgacaatagcccctcaaaacctgctgctccaggatccgctcgaggaacccct
aattcgaccaagtcagccaagggaaagaggaaaaacaatgatgaggctaaaacatcaaat
ggtgctgctacgaagaaagtgaaaacagaaaatgaggtaaaaactgtcaaggatgaaccg
gcttctgctgcaaagaatagtgcgcccgctaaaggcgcgtcgtcttcaaaagccgcagct
tcaccatctactggacccgtcacagaagatgaaatcagggcagttctgctacataaggca
cctgtcaccactcaggatcttgttgcaaagtttaaatctcggctaaggaacaaagaggac
aagggtgcttttgctgatattttgaggaggatttccaaaatacaaaagacaaatggcccc
agctatgtggtgttgagggacaaatga
DBGET
integrated database retrieval system
